Mercurial > repos > geert-vandeweyer > vcf_to_variantdb
comparison VCF_to_VariantDB.xml @ 4:7ebc71784e9f draft
Fixed env.sh dependency
author | geert-vandeweyer |
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date | Wed, 19 Feb 2014 06:53:47 -0500 |
parents | d03a63a57e82 |
children | 04e3bba317f4 |
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3:f2525e35b8e9 | 4:7ebc71784e9f |
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3 <expand macro="requirements" /> | 3 <expand macro="requirements" /> |
4 <macros> | 4 <macros> |
5 <import>VCF_to_VariantDB_macros.xml</import> | 5 <import>VCF_to_VariantDB_macros.xml</import> |
6 </macros> | 6 </macros> |
7 <command interpreter="perl"> | 7 <command interpreter="perl"> |
8 VCF_to_DB_reverse.pl | 8 VCF_to_VariantDB.pl |
9 -H '@URL@' | 9 -H '@URL@' |
10 -R $__root_dir__ | 10 -R $__root_dir__ |
11 ## input file | 11 ## input file |
12 -v $input1 | 12 -v $input1 |
13 -V $__app__.security.encode_id( '%s' % $input1.id ) | 13 -V $__app__.security.encode_id( '%s' % $input1.id ) |