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comparison VCF_to_VariantDB.xml @ 8:db44ff975de8 draft

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Corrected macro.xml handling of GALAXY_URL
author geert-vandeweyer
date Tue, 10 Jun 2014 06:01:18 -0400
parents 04e3bba317f4
children 3b27cae9b359
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7:04e3bba317f4 8:db44ff975de8
4 <macros> 4 <macros>
5 <import>VCF_to_VariantDB_macros.xml</import> 5 <import>VCF_to_VariantDB_macros.xml</import>
6 </macros> 6 </macros>
7 <command interpreter="perl"> 7 <command interpreter="perl">
8 VCF_to_VariantDB.pl 8 VCF_to_VariantDB.pl
9 -H '@URL@' 9 -H "@URL@"
10 -R $__root_dir__ 10 -R $__root_dir__
11 ## input file 11 ## input file
12 -v $input1 12 -v $input1
13 -V $__app__.security.encode_id( '%s' % $input1.id ) 13 -V $__app__.security.encode_id( '%s' % $input1.id )
14 ## user email, for identification in DataBase 14 ## user email, for identification in DataBase