Mercurial > repos > geert-vandeweyer > vcf_to_variantdb
comparison VCF_to_VariantDB.xml @ 11:fb815517e918 draft default tip
Added support for 23andMe VCF files generated by ArrogantRobot
| author | geert-vandeweyer |
|---|---|
| date | Fri, 20 Feb 2015 05:49:54 -0500 |
| parents | d5040a542e9d |
| children |
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| 10:d5040a542e9d | 11:fb815517e918 |
|---|---|
| 55 <param name="format" type="select" label="VCF Source Application" help="Supported formats are VCF from UnifiedGenotyper, HaplotypeCaller, Mutect and VarScan"> | 55 <param name="format" type="select" label="VCF Source Application" help="Supported formats are VCF from UnifiedGenotyper, HaplotypeCaller, Mutect and VarScan"> |
| 56 <option value="UG">GATK Unified Genotyper</option> | 56 <option value="UG">GATK Unified Genotyper</option> |
| 57 <option value="HC">GATK Haplotype Caller</option> | 57 <option value="HC">GATK Haplotype Caller</option> |
| 58 <option value="MT">GATK MuTect</option> | 58 <option value="MT">GATK MuTect</option> |
| 59 <option value="VS">Samtools VarScan</option> | 59 <option value="VS">Samtools VarScan</option> |
| 60 <option vlaue="23">23andMe (by ArrogantRobot)</option> | |
| 60 </param> | 61 </param> |
| 61 <conditional name="sendData"> | 62 <conditional name="sendData"> |
| 62 <param name="store" type="select" label="Store VCF and BAM Files:" help="This option allows you to send the BAM and VCF files to our storage server for dynamic loading into IGV. If you store them there, please delete them here." > | 63 <param name="store" type="select" label="Store VCF and BAM Files:" help="This option allows you to send the BAM and VCF files to our storage server for dynamic loading into IGV. If you store them there, please delete them here." > |
| 63 <option value="false">No</option> | 64 <option value="false">No</option> |
| 64 <option value="true">Yes</option> | 65 <option value="true">Yes</option> |