changeset 6:775372e00f55 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/readme.rst	Fri Feb 21 07:17:28 2014 -0500
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+Galaxy wrapper for VariantDB Import
+===================================
+
+This wrapper and VariantDB is written by Geert Vandeweyer. 
+
+The recommended installation is by means of the toolshed_.
+
+.. _toolshed: http://toolshed.g2.bx.psu.edu/view/geert-vandeweyer/vcf_to_variantdb
+
+Galaxy should be able to install the needed perl module dependencies automatically
+for you. To allow your server to communicate with VariantDB, you must edit the GALAXY_URL environment variable in the file:
+
+<tool_dependency_dir>/environment_settings/GALAXY_URL/geert-vandeweyer/vcf_to_variantdb/<hash_string>/env.sh
+
+to point to the full URL of the server (e.g: http://biominavm-galaxy.biomina.be/galaxy ) where you have installed the wrapper.
+
+Finally, if you also have a private VariantDB instance, you need to add it to the wrapper configuration file, as an extra option.

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Fri Feb 21 07:17:28 2014 -0500
@@ -0,0 +1,9 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <set_environment version="1.0">
+        <environment_variable action="set_to" name="GALAXY_URL">http://your.galaxy.server/and_sub_path/</environment_variable>
+    </set_environment>
+    <package name="perl_module_libwww" version="6.05">
+        <repository changeset_revision="f217bf3faf3b" name="package_perl_libwww" owner="geert-vandeweyer" toolshed="http://toolshed.g2.bx.psu.edu" />
+    </package>
+</tool_dependency>