Mercurial > repos > geert-vandeweyer > vcf_to_variantdb

changeset 4:7ebc71784e9f draft

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Fixed env.sh dependency
author geert-vandeweyer
date Wed, 19 Feb 2014 06:53:47 -0500
parents f2525e35b8e9
children 6ddc1c6472ef
files VCF_to_VariantDB.xml tool_dependencies.xml
diffstat 2 files changed, 4 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/VCF_to_VariantDB.xml	Wed Feb 19 06:47:41 2014 -0500
+++ b/VCF_to_VariantDB.xml	Wed Feb 19 06:53:47 2014 -0500
@@ -5,7 +5,7 @@
     <import>VCF_to_VariantDB_macros.xml</import>
   </macros>
   <command interpreter="perl">
-    VCF_to_DB_reverse.pl
+    VCF_to_VariantDB.pl
       -H '@URL@'
       -R $__root_dir__
       ## input file
--- a/tool_dependencies.xml	Wed Feb 19 06:47:41 2014 -0500
+++ b/tool_dependencies.xml	Wed Feb 19 06:53:47 2014 -0500
@@ -1,5 +1,8 @@
 <?xml version="1.0"?>
 <tool_dependency>
+    <set_environment version="1.0">
+        <environment_variable action="set_to" name="GALAXY_URL">http://your.galaxy.server/and_sub_path/</environment_variable>
+    </set_environment>
     <package name="perl_module_libwww" version="6.05">
         <repository changeset_revision="f217bf3faf3b" name="package_perl_libwww" owner="geert-vandeweyer" toolshed="http://toolshed.g2.bx.psu.edu" />
     </package>