Mercurial > repos > genouest > braker

comparison README.md @ 0:e50ea151f221 draft

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"planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/braker commit aa4a7f87d556b5af582d1ab8fe9a986922a59a1d"
author genouest
date Tue, 05 Oct 2021 12:35:42 +0000
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1 # Braker
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3 This tool is not in IUC because of the license issues with GeneMark and ProtHint that makes it impossible to test it using CI.
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5 ## GeneMark
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7 Braker can use GeneMark to predict gene, but due to licensing issues, we are not allowed to distribute GeneMark automatically.
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9 If you want to use it, the Galaxy administrator needs to install GeneMark, and set the `GENEMARK_PATH` variable on the job destination.
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11 ## ProtHint
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13 Braker can use ProtHint to use protein sequences as hints to predict genes, but due to licensing issues, we are not allowed to distribute ProtHint automatically.
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15 If you want to use it, the Galaxy administrator needs to install ProtHint, and set the `PROTHINT_PATH` variable on the job destination.
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17 ## Running tests
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19 Tests require working GeneMark and ProtHint installations, which means both GENEMARK_PATH and PROTHINT_PATH are set.
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21 You should also copy a valid GeneMark license (from http://topaz.gatech.edu/GeneMark/license_download.cgi) in test-data/genemark_license.gm_key