Mercurial > repos > genouest > braker3

comparison test-data/out_bam/braker.gtf @ 0:3c0865d1172f draft

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planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/braker commit d6e73c0417506d93c905b4aeb77d92350b662fbb
author genouest
date Wed, 06 Sep 2023 09:50:28 +0000
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:3c0865d1172f
1 sample AUGUSTUS start_codon 79526 79528 . + 0 transcript_id "file_1_g14.t1"; gene_id "file_1_g14";
2 sample AUGUSTUS CDS 79526 80474 0.4 + 0 transcript_id "file_1_g14.t1"; gene_id "file_1_g14";
3 sample AUGUSTUS exon 79526 80474 . + . transcript_id "file_1_g14.t1"; gene_id "file_1_g14";
4 sample AUGUSTUS intron 80475 87860 0.49 + . transcript_id "file_1_g14.t1"; gene_id "file_1_g14";
5 sample AUGUSTUS CDS 87861 88125 0.39 + 2 transcript_id "file_1_g14.t1"; gene_id "file_1_g14";
6 sample AUGUSTUS exon 87861 88125 . + . transcript_id "file_1_g14.t1"; gene_id "file_1_g14";
7 sample AUGUSTUS intron 88126 92148 0.19 + . transcript_id "file_1_g14.t1"; gene_id "file_1_g14";
8 sample AUGUSTUS CDS 92149 92252 0.17 + 1 transcript_id "file_1_g14.t1"; gene_id "file_1_g14";
9 sample AUGUSTUS exon 92149 92252 . + . transcript_id "file_1_g14.t1"; gene_id "file_1_g14";
10 sample AUGUSTUS intron 92253 94562 0.19 + . transcript_id "file_1_g14.t1"; gene_id "file_1_g14";
11 sample AUGUSTUS CDS 94563 94732 0.96 + 2 transcript_id "file_1_g14.t1"; gene_id "file_1_g14";
12 sample AUGUSTUS exon 94563 94732 . + . transcript_id "file_1_g14.t1"; gene_id "file_1_g14";
13 sample AUGUSTUS intron 94733 94872 0.91 + . transcript_id "file_1_g14.t1"; gene_id "file_1_g14";
14 sample AUGUSTUS CDS 94873 95333 0.79 + 0 transcript_id "file_1_g14.t1"; gene_id "file_1_g14";
15 sample AUGUSTUS exon 94873 95333 . + . transcript_id "file_1_g14.t1"; gene_id "file_1_g14";
16 sample AUGUSTUS intron 95334 95584 0.51 + . transcript_id "file_1_g14.t1"; gene_id "file_1_g14";
17 sample AUGUSTUS CDS 95585 95762 0.35 + 1 transcript_id "file_1_g14.t1"; gene_id "file_1_g14";
18 sample AUGUSTUS gene 79526 95762 0.01 + . g14
19 sample AUGUSTUS transcript 79526 95762 0.01 + . g14.t1
20 sample AUGUSTUS exon 95585 95762 . + . transcript_id "file_1_g14.t1"; gene_id "file_1_g14";
21 sample AUGUSTUS stop_codon 95760 95762 . + 0 transcript_id "file_1_g14.t1"; gene_id "file_1_g14";
22 sample4 AUGUSTUS stop_codon 4248 4250 . - 0 transcript_id "file_1_g28.t1"; gene_id "file_1_g28";
23 sample4 AUGUSTUS CDS 4248 4738 0.42 - 2 transcript_id "file_1_g28.t1"; gene_id "file_1_g28";
24 sample4 AUGUSTUS exon 4248 4738 . - . transcript_id "file_1_g28.t1"; gene_id "file_1_g28";
25 sample4 AUGUSTUS intron 4739 4929 0.42 - . transcript_id "file_1_g28.t1"; gene_id "file_1_g28";
26 sample4 AUGUSTUS CDS 4930 5539 0.37 - 0 transcript_id "file_1_g28.t1"; gene_id "file_1_g28";
27 sample4 AUGUSTUS exon 4930 5539 . - . transcript_id "file_1_g28.t1"; gene_id "file_1_g28";
28 sample4 AUGUSTUS intron 5540 6038 0.29 - . transcript_id "file_1_g28.t1"; gene_id "file_1_g28";
29 sample4 AUGUSTUS CDS 6039 6494 0.47 - 0 transcript_id "file_1_g28.t1"; gene_id "file_1_g28";
30 sample4 AUGUSTUS gene 4248 6494 0.12 - . g28
31 sample4 AUGUSTUS transcript 4248 6494 0.12 - . g28.t1
32 sample4 AUGUSTUS exon 6039 6494 . - . transcript_id "file_1_g28.t1"; gene_id "file_1_g28";
33 sample4 AUGUSTUS start_codon 6492 6494 . - 0 transcript_id "file_1_g28.t1"; gene_id "file_1_g28";
34 sample AUGUSTUS stop_codon 209044 209046 . - 0 transcript_id "file_1_g24.t1"; gene_id "file_1_g24";
35 sample AUGUSTUS CDS 209044 210483 0.38 - 0 transcript_id "file_1_g24.t1"; gene_id "file_1_g24";
36 sample AUGUSTUS exon 209044 210483 . - . transcript_id "file_1_g24.t1"; gene_id "file_1_g24";
37 sample AUGUSTUS start_codon 210481 210483 . - 0 transcript_id "file_1_g24.t1"; gene_id "file_1_g24";
38 sample AUGUSTUS gene 209044 210483 0.38 - . g24
39 sample AUGUSTUS transcript 209044 210483 0.38 - . g24.t1
40 sample AUGUSTUS start_codon 2126 2128 . + 0 transcript_id "file_1_g2.t1"; gene_id "file_1_g2";
41 sample AUGUSTUS CDS 2126 2199 1 + 0 transcript_id "file_1_g2.t1"; gene_id "file_1_g2";
42 sample AUGUSTUS exon 2126 2199 . + . transcript_id "file_1_g2.t1"; gene_id "file_1_g2";
43 sample AUGUSTUS intron 2200 2257 1 + . transcript_id "file_1_g2.t1"; gene_id "file_1_g2";
44 sample AUGUSTUS CDS 2258 3224 0.49 + 1 transcript_id "file_1_g2.t1"; gene_id "file_1_g2";
45 sample AUGUSTUS exon 2258 3224 . + . transcript_id "file_1_g2.t1"; gene_id "file_1_g2";
46 sample AUGUSTUS intron 3225 3283 0.29 + . transcript_id "file_1_g2.t1"; gene_id "file_1_g2";
47 sample AUGUSTUS CDS 3284 3512 0.16 + 0 transcript_id "file_1_g2.t1"; gene_id "file_1_g2";
48 sample AUGUSTUS exon 3284 3512 . + . transcript_id "file_1_g2.t1"; gene_id "file_1_g2";
49 sample AUGUSTUS intron 3513 3807 0.22 + . transcript_id "file_1_g2.t1"; gene_id "file_1_g2";
50 sample AUGUSTUS CDS 3808 3863 0.54 + 2 transcript_id "file_1_g2.t1"; gene_id "file_1_g2";
51 sample AUGUSTUS gene 2126 3863 0.1 + . g2
52 sample AUGUSTUS transcript 2126 3863 0.1 + . g2.t1
53 sample AUGUSTUS exon 3808 3863 . + . transcript_id "file_1_g2.t1"; gene_id "file_1_g2";
54 sample AUGUSTUS stop_codon 3861 3863 . + 0 transcript_id "file_1_g2.t1"; gene_id "file_1_g2";
55 sample GeneMark.hmm3 stop_codon 15344 15346 . - 0 gene_id "file_2_4_g"; transcript_id "file_2_4_t";
56 sample GeneMark.hmm3 CDS 15344 17164 . - 0 gene_id "file_2_4_g"; transcript_id "file_2_4_t"; cds_type "file_2_Terminal"; count "file_2_5_5";
57 sample GeneMark.hmm3 intron 17165 17295 . - 0 gene_id "file_2_4_g"; transcript_id "file_2_4_t";
58 sample GeneMark.hmm3 CDS 17296 18096 . - 0 gene_id "file_2_4_g"; transcript_id "file_2_4_t"; cds_type "file_2_Internal"; count "file_2_4_5";
59 sample GeneMark.hmm3 intron 18097 18220 . - 0 gene_id "file_2_4_g"; transcript_id "file_2_4_t";
60 sample GeneMark.hmm3 CDS 18221 18259 . - 0 gene_id "file_2_4_g"; transcript_id "file_2_4_t"; cds_type "file_2_Internal"; count "file_2_3_5";
61 sample GeneMark.hmm3 intron 18260 18462 . - 0 gene_id "file_2_4_g"; transcript_id "file_2_4_t";
62 sample GeneMark.hmm3 CDS 18463 19499 . - 2 gene_id "file_2_4_g"; transcript_id "file_2_4_t"; cds_type "file_2_Internal"; count "file_2_2_5";
63 sample GeneMark.hmm3 intron 19500 19606 . - 1 gene_id "file_2_4_g"; transcript_id "file_2_4_t";
64 sample GeneMark.hmm3 gene 15344 21542 . - . gene_id "file_2_4_g"; transcript_id "file_2_4_t";
65 sample GeneMark.hmm3 mRNA 15344 21542 . - . gene_id "file_2_4_g"; transcript_id "file_2_4_t";
66 sample GeneMark.hmm3 CDS 19607 21542 . - 0 gene_id "file_2_4_g"; transcript_id "file_2_4_t"; cds_type "file_2_Initial"; count "file_2_1_5";
67 sample GeneMark.hmm3 start_codon 21540 21542 . - 0 gene_id "file_2_4_g"; transcript_id "file_2_4_t";
68 sample AUGUSTUS start_codon 119778 119780 . + 0 transcript_id "file_1_g18.t1"; gene_id "file_1_g18";
69 sample AUGUSTUS CDS 119778 120378 1 + 0 transcript_id "file_1_g18.t1"; gene_id "file_1_g18";
70 sample AUGUSTUS exon 119778 120378 . + . transcript_id "file_1_g18.t1"; gene_id "file_1_g18";
71 sample AUGUSTUS intron 120379 123327 0.98 + . transcript_id "file_1_g18.t1"; gene_id "file_1_g18";
72 sample AUGUSTUS CDS 123328 123512 0.99 + 2 transcript_id "file_1_g18.t1"; gene_id "file_1_g18";
73 sample AUGUSTUS exon 123328 123512 . + . transcript_id "file_1_g18.t1"; gene_id "file_1_g18";
74 sample AUGUSTUS intron 123513 133208 0.5 + . transcript_id "file_1_g18.t1"; gene_id "file_1_g18";
75 sample AUGUSTUS CDS 133209 134539 1 + 0 transcript_id "file_1_g18.t1"; gene_id "file_1_g18";
76 sample AUGUSTUS exon 133209 134539 . + . transcript_id "file_1_g18.t1"; gene_id "file_1_g18";
77 sample AUGUSTUS intron 134540 134667 1 + . transcript_id "file_1_g18.t1"; gene_id "file_1_g18";
78 sample AUGUSTUS CDS 134668 135510 1 + 1 transcript_id "file_1_g18.t1"; gene_id "file_1_g18";
79 sample AUGUSTUS exon 134668 135510 . + . transcript_id "file_1_g18.t1"; gene_id "file_1_g18";
80 sample AUGUSTUS intron 135511 135568 1 + . transcript_id "file_1_g18.t1"; gene_id "file_1_g18";
81 sample AUGUSTUS CDS 135569 136346 0.99 + 1 transcript_id "file_1_g18.t1"; gene_id "file_1_g18";
82 sample AUGUSTUS gene 119778 136346 0.49 + . g18
83 sample AUGUSTUS transcript 119778 136346 0.49 + . g18.t1
84 sample AUGUSTUS exon 135569 136346 . + . transcript_id "file_1_g18.t1"; gene_id "file_1_g18";
85 sample AUGUSTUS stop_codon 136344 136346 . + 0 transcript_id "file_1_g18.t1"; gene_id "file_1_g18";
86 sample AUGUSTUS stop_codon 183489 183491 . - 0 transcript_id "file_1_g22.t1"; gene_id "file_1_g22";
87 sample AUGUSTUS CDS 183489 183643 0.43 - 2 transcript_id "file_1_g22.t1"; gene_id "file_1_g22";
88 sample AUGUSTUS exon 183489 183643 . - . transcript_id "file_1_g22.t1"; gene_id "file_1_g22";
89 sample AUGUSTUS intron 183644 183709 0.4 - . transcript_id "file_1_g22.t1"; gene_id "file_1_g22";
90 sample AUGUSTUS CDS 183710 183954 0.24 - 1 transcript_id "file_1_g22.t1"; gene_id "file_1_g22";
91 sample AUGUSTUS exon 183710 183954 . - . transcript_id "file_1_g22.t1"; gene_id "file_1_g22";
92 sample AUGUSTUS intron 183955 186056 0.28 - . transcript_id "file_1_g22.t1"; gene_id "file_1_g22";
93 sample AUGUSTUS CDS 186057 186166 0.43 - 0 transcript_id "file_1_g22.t1"; gene_id "file_1_g22";
94 sample AUGUSTUS gene 183489 186166 0.22 - . g22
95 sample AUGUSTUS transcript 183489 186166 0.22 - . g22.t1
96 sample AUGUSTUS exon 186057 186166 . - . transcript_id "file_1_g22.t1"; gene_id "file_1_g22";
97 sample AUGUSTUS start_codon 186164 186166 . - 0 transcript_id "file_1_g22.t1"; gene_id "file_1_g22";
98 sample4 GeneMark.hmm3 stop_codon 5997 5999 . - 0 gene_id "file_2_23_g"; transcript_id "file_2_23_t";
99 sample4 GeneMark.hmm3 CDS 5997 6450 . - 1 gene_id "file_2_23_g"; transcript_id "file_2_23_t"; cds_type "file_2_Terminal"; count "file_2_1_1";
100 sample4 GeneMark.hmm3 gene 5997 6450 . - . gene_id "file_2_23_g"; transcript_id "file_2_23_t";
101 sample4 GeneMark.hmm3 mRNA 5997 6450 . - . gene_id "file_2_23_g"; transcript_id "file_2_23_t";
102 sample GeneMark.hmm3 stop_codon 14247 14249 . - 0 gene_id "file_2_3_g"; transcript_id "file_2_3_t";
103 sample GeneMark.hmm3 CDS 14247 14672 . - 0 gene_id "file_2_3_g"; transcript_id "file_2_3_t"; cds_type "file_2_Single"; count "file_2_1_1";
104 sample GeneMark.hmm3 gene 14247 14672 . - . gene_id "file_2_3_g"; transcript_id "file_2_3_t";
105 sample GeneMark.hmm3 mRNA 14247 14672 . - . gene_id "file_2_3_g"; transcript_id "file_2_3_t";
106 sample GeneMark.hmm3 start_codon 14670 14672 . - 0 gene_id "file_2_3_g"; transcript_id "file_2_3_t";
107 sample GeneMark.hmm3 start_codon 94831 94833 . + 0 gene_id "file_2_12_g"; transcript_id "file_2_12_t";
108 sample GeneMark.hmm3 CDS 94831 95333 . + 0 gene_id "file_2_12_g"; transcript_id "file_2_12_t"; cds_type "file_2_Initial"; count "file_2_1_2";
109 sample GeneMark.hmm3 intron 95334 95386 . + 2 gene_id "file_2_12_g"; transcript_id "file_2_12_t";
110 sample GeneMark.hmm3 gene 94831 95762 . + . gene_id "file_2_12_g"; transcript_id "file_2_12_t";
111 sample GeneMark.hmm3 mRNA 94831 95762 . + . gene_id "file_2_12_g"; transcript_id "file_2_12_t";
112 sample GeneMark.hmm3 CDS 95387 95762 . + 1 gene_id "file_2_12_g"; transcript_id "file_2_12_t"; cds_type "file_2_Terminal"; count "file_2_2_2";
113 sample GeneMark.hmm3 stop_codon 95760 95762 . + 0 gene_id "file_2_12_g"; transcript_id "file_2_12_t";
114 sample4 GeneMark.hmm3 CDS 2258 3224 . + 1 gene_id "file_2_22_g"; transcript_id "file_2_22_t"; cds_type "file_2_Internal"; count "file_2_1_3";
115 sample4 GeneMark.hmm3 intron 3225 3283 . + 0 gene_id "file_2_22_g"; transcript_id "file_2_22_t";
116 sample4 GeneMark.hmm3 CDS 3284 3755 . + 0 gene_id "file_2_22_g"; transcript_id "file_2_22_t"; cds_type "file_2_Internal"; count "file_2_2_3";
117 sample4 GeneMark.hmm3 intron 3756 4934 . + 1 gene_id "file_2_22_g"; transcript_id "file_2_22_t";
118 sample4 GeneMark.hmm3 gene 2258 5707 . + . gene_id "file_2_22_g"; transcript_id "file_2_22_t";
119 sample4 GeneMark.hmm3 mRNA 2258 5707 . + . gene_id "file_2_22_g"; transcript_id "file_2_22_t";
120 sample4 GeneMark.hmm3 CDS 4935 5707 . + 2 gene_id "file_2_22_g"; transcript_id "file_2_22_t"; cds_type "file_2_Terminal"; count "file_2_3_3";
121 sample4 GeneMark.hmm3 stop_codon 5705 5707 . + 0 gene_id "file_2_22_g"; transcript_id "file_2_22_t";
122 sample GeneMark.hmm3 stop_codon 183489 183491 . - 0 gene_id "file_2_19_g"; transcript_id "file_2_19_t";
123 sample GeneMark.hmm3 CDS 183489 183658 . - 2 gene_id "file_2_19_g"; transcript_id "file_2_19_t"; cds_type "file_2_Terminal"; count "file_2_3_3";
124 sample GeneMark.hmm3 intron 183659 183709 . - 1 gene_id "file_2_19_g"; transcript_id "file_2_19_t";
125 sample GeneMark.hmm3 CDS 183710 183924 . - 1 gene_id "file_2_19_g"; transcript_id "file_2_19_t"; cds_type "file_2_Internal"; count "file_2_2_3";
126 sample GeneMark.hmm3 intron 183925 186056 . - 2 gene_id "file_2_19_g"; transcript_id "file_2_19_t";
127 sample GeneMark.hmm3 gene 183489 186166 . - . gene_id "file_2_19_g"; transcript_id "file_2_19_t";
128 sample GeneMark.hmm3 mRNA 183489 186166 . - . gene_id "file_2_19_g"; transcript_id "file_2_19_t";
129 sample GeneMark.hmm3 CDS 186057 186166 . - 0 gene_id "file_2_19_g"; transcript_id "file_2_19_t"; cds_type "file_2_Initial"; count "file_2_1_3";
130 sample GeneMark.hmm3 start_codon 186164 186166 . - 0 gene_id "file_2_19_g"; transcript_id "file_2_19_t";
131 sample GeneMark.hmm3 stop_codon 5997 5999 . - 0 gene_id "file_2_2_g"; transcript_id "file_2_2_t";
132 sample GeneMark.hmm3 CDS 5997 6450 . - 1 gene_id "file_2_2_g"; transcript_id "file_2_2_t"; cds_type "file_2_Terminal"; count "file_2_5_5";
133 sample GeneMark.hmm3 intron 6451 7715 . - 2 gene_id "file_2_2_g"; transcript_id "file_2_2_t";
134 sample GeneMark.hmm3 CDS 7716 8385 . - 2 gene_id "file_2_2_g"; transcript_id "file_2_2_t"; cds_type "file_2_Internal"; count "file_2_4_5";
135 sample GeneMark.hmm3 intron 8386 8706 . - 1 gene_id "file_2_2_g"; transcript_id "file_2_2_t";
136 sample GeneMark.hmm3 CDS 8707 10499 . - 1 gene_id "file_2_2_g"; transcript_id "file_2_2_t"; cds_type "file_2_Internal"; count "file_2_3_5";
137 sample GeneMark.hmm3 intron 10500 10642 . - 2 gene_id "file_2_2_g"; transcript_id "file_2_2_t";
138 sample GeneMark.hmm3 CDS 10643 10794 . - 0 gene_id "file_2_2_g"; transcript_id "file_2_2_t"; cds_type "file_2_Internal"; count "file_2_2_5";
139 sample GeneMark.hmm3 intron 10795 10816 . - 0 gene_id "file_2_2_g"; transcript_id "file_2_2_t";
140 sample GeneMark.hmm3 gene 5997 11104 . - . gene_id "file_2_2_g"; transcript_id "file_2_2_t";
141 sample GeneMark.hmm3 mRNA 5997 11104 . - . gene_id "file_2_2_g"; transcript_id "file_2_2_t";
142 sample GeneMark.hmm3 CDS 10817 11104 . - 0 gene_id "file_2_2_g"; transcript_id "file_2_2_t"; cds_type "file_2_Initial"; count "file_2_1_5";
143 sample GeneMark.hmm3 start_codon 11102 11104 . - 0 gene_id "file_2_2_g"; transcript_id "file_2_2_t";
144 sample AUGUSTUS stop_codon 4248 4250 . - 0 transcript_id "file_1_g3.t1"; gene_id "file_1_g3";
145 sample AUGUSTUS CDS 4248 4738 0.48 - 2 transcript_id "file_1_g3.t1"; gene_id "file_1_g3";
146 sample AUGUSTUS exon 4248 4738 . - . transcript_id "file_1_g3.t1"; gene_id "file_1_g3";
147 sample AUGUSTUS intron 4739 4929 0.48 - . transcript_id "file_1_g3.t1"; gene_id "file_1_g3";
148 sample AUGUSTUS CDS 4930 5539 0.45 - 0 transcript_id "file_1_g3.t1"; gene_id "file_1_g3";
149 sample AUGUSTUS exon 4930 5539 . - . transcript_id "file_1_g3.t1"; gene_id "file_1_g3";
150 sample AUGUSTUS intron 5540 6038 0.26 - . transcript_id "file_1_g3.t1"; gene_id "file_1_g3";
151 sample AUGUSTUS CDS 6039 6450 0.42 - 1 transcript_id "file_1_g3.t1"; gene_id "file_1_g3";
152 sample AUGUSTUS exon 6039 6450 . - . transcript_id "file_1_g3.t1"; gene_id "file_1_g3";
153 sample AUGUSTUS intron 6451 7715 0.85 - . transcript_id "file_1_g3.t1"; gene_id "file_1_g3";
154 sample AUGUSTUS CDS 7716 8362 0.49 - 0 transcript_id "file_1_g3.t1"; gene_id "file_1_g3";
155 sample AUGUSTUS exon 7716 8362 . - . transcript_id "file_1_g3.t1"; gene_id "file_1_g3";
156 sample AUGUSTUS intron 8363 8725 0.31 - . transcript_id "file_1_g3.t1"; gene_id "file_1_g3";
157 sample AUGUSTUS CDS 8726 10495 0.23 - 0 transcript_id "file_1_g3.t1"; gene_id "file_1_g3";
158 sample AUGUSTUS exon 8726 10495 . - . transcript_id "file_1_g3.t1"; gene_id "file_1_g3";
159 sample AUGUSTUS intron 10496 10662 0.22 - . transcript_id "file_1_g3.t1"; gene_id "file_1_g3";
160 sample AUGUSTUS CDS 10663 10794 0.45 - 0 transcript_id "file_1_g3.t1"; gene_id "file_1_g3";
161 sample AUGUSTUS exon 10663 10794 . - . transcript_id "file_1_g3.t1"; gene_id "file_1_g3";
162 sample AUGUSTUS intron 10795 10852 0.95 - . transcript_id "file_1_g3.t1"; gene_id "file_1_g3";
163 sample AUGUSTUS CDS 10853 11104 0.72 - 0 transcript_id "file_1_g3.t1"; gene_id "file_1_g3";
164 sample AUGUSTUS gene 4248 11104 0.01 - . g3
165 sample AUGUSTUS transcript 4248 11104 0.01 - . g3.t1
166 sample AUGUSTUS exon 10853 11104 . - . transcript_id "file_1_g3.t1"; gene_id "file_1_g3";
167 sample AUGUSTUS start_codon 11102 11104 . - 0 transcript_id "file_1_g3.t1"; gene_id "file_1_g3";
168 sample AUGUSTUS start_codon 194065 194067 . + 0 transcript_id "file_1_g23.t1"; gene_id "file_1_g23";
169 sample AUGUSTUS CDS 194065 194461 0.19 + 0 transcript_id "file_1_g23.t1"; gene_id "file_1_g23";
170 sample AUGUSTUS exon 194065 194461 . + . transcript_id "file_1_g23.t1"; gene_id "file_1_g23";
171 sample AUGUSTUS intron 194462 194517 0.12 + . transcript_id "file_1_g23.t1"; gene_id "file_1_g23";
172 sample AUGUSTUS CDS 194518 194669 0.21 + 2 transcript_id "file_1_g23.t1"; gene_id "file_1_g23";
173 sample AUGUSTUS gene 194065 194669 0.06 + . g23
174 sample AUGUSTUS transcript 194065 194669 0.06 + . g23.t1
175 sample AUGUSTUS exon 194518 194669 . + . transcript_id "file_1_g23.t1"; gene_id "file_1_g23";
176 sample AUGUSTUS stop_codon 194667 194669 . + 0 transcript_id "file_1_g23.t1"; gene_id "file_1_g23";
177 sample AUGUSTUS start_codon 116548 116550 . + 0 transcript_id "file_1_g17.t1"; gene_id "file_1_g17";
178 sample AUGUSTUS CDS 116548 119382 0.85 + 0 transcript_id "file_1_g17.t1"; gene_id "file_1_g17";
179 sample AUGUSTUS exon 116548 119382 . + . transcript_id "file_1_g17.t1"; gene_id "file_1_g17";
180 sample AUGUSTUS stop_codon 119380 119382 . + 0 transcript_id "file_1_g17.t1"; gene_id "file_1_g17";
181 sample AUGUSTUS gene 116548 119382 0.85 + . g17
182 sample AUGUSTUS transcript 116548 119382 0.85 + . g17.t1
183 sample AUGUSTUS start_codon 143824 143826 . + 0 transcript_id "file_1_g19.t1"; gene_id "file_1_g19";
184 sample AUGUSTUS CDS 143824 143830 0.99 + 0 transcript_id "file_1_g19.t1"; gene_id "file_1_g19";
185 sample AUGUSTUS exon 143824 143830 . + . transcript_id "file_1_g19.t1"; gene_id "file_1_g19";
186 sample AUGUSTUS intron 143831 144252 0.74 + . transcript_id "file_1_g19.t1"; gene_id "file_1_g19";
187 sample AUGUSTUS CDS 144253 144559 0.19 + 2 transcript_id "file_1_g19.t1"; gene_id "file_1_g19";
188 sample AUGUSTUS exon 144253 144559 . + . transcript_id "file_1_g19.t1"; gene_id "file_1_g19";
189 sample AUGUSTUS intron 144560 145804 0.24 + . transcript_id "file_1_g19.t1"; gene_id "file_1_g19";
190 sample AUGUSTUS CDS 145805 146055 0.13 + 1 transcript_id "file_1_g19.t1"; gene_id "file_1_g19";
191 sample AUGUSTUS exon 145805 146055 . + . transcript_id "file_1_g19.t1"; gene_id "file_1_g19";
192 sample AUGUSTUS intron 146056 149018 0.23 + . transcript_id "file_1_g19.t1"; gene_id "file_1_g19";
193 sample AUGUSTUS CDS 149019 149244 0.28 + 2 transcript_id "file_1_g19.t1"; gene_id "file_1_g19";
194 sample AUGUSTUS exon 149019 149244 . + . transcript_id "file_1_g19.t1"; gene_id "file_1_g19";
195 sample AUGUSTUS intron 149245 149411 0.66 + . transcript_id "file_1_g19.t1"; gene_id "file_1_g19";
196 sample AUGUSTUS CDS 149412 149586 0.26 + 1 transcript_id "file_1_g19.t1"; gene_id "file_1_g19";
197 sample AUGUSTUS exon 149412 149586 . + . transcript_id "file_1_g19.t1"; gene_id "file_1_g19";
198 sample AUGUSTUS intron 149587 149672 0.43 + . transcript_id "file_1_g19.t1"; gene_id "file_1_g19";
199 sample AUGUSTUS CDS 149673 149917 0.27 + 0 transcript_id "file_1_g19.t1"; gene_id "file_1_g19";
200 sample AUGUSTUS exon 149673 149917 . + . transcript_id "file_1_g19.t1"; gene_id "file_1_g19";
201 sample AUGUSTUS intron 149918 152341 0.26 + . transcript_id "file_1_g19.t1"; gene_id "file_1_g19";
202 sample AUGUSTUS CDS 152342 152429 0.26 + 1 transcript_id "file_1_g19.t1"; gene_id "file_1_g19";
203 sample AUGUSTUS exon 152342 152429 . + . transcript_id "file_1_g19.t1"; gene_id "file_1_g19";
204 sample AUGUSTUS intron 152430 152495 0.32 + . transcript_id "file_1_g19.t1"; gene_id "file_1_g19";
205 sample AUGUSTUS CDS 152496 152751 0.41 + 0 transcript_id "file_1_g19.t1"; gene_id "file_1_g19";
206 sample AUGUSTUS exon 152496 152751 . + . transcript_id "file_1_g19.t1"; gene_id "file_1_g19";
207 sample AUGUSTUS intron 152752 153206 0.42 + . transcript_id "file_1_g19.t1"; gene_id "file_1_g19";
208 sample AUGUSTUS CDS 153207 159043 0.51 + 2 transcript_id "file_1_g19.t1"; gene_id "file_1_g19";
209 sample AUGUSTUS gene 143824 159043 0.02 + . g19
210 sample AUGUSTUS transcript 143824 159043 0.02 + . g19.t1
211 sample AUGUSTUS exon 153207 159043 . + . transcript_id "file_1_g19.t1"; gene_id "file_1_g19";
212 sample AUGUSTUS stop_codon 159041 159043 . + 0 transcript_id "file_1_g19.t1"; gene_id "file_1_g19";
213 sample AUGUSTUS start_codon 58640 58642 . + 0 transcript_id "file_1_g12.t1"; gene_id "file_1_g12";
214 sample AUGUSTUS CDS 58640 58677 0.01 + 0 transcript_id "file_1_g12.t1"; gene_id "file_1_g12";
215 sample AUGUSTUS exon 58640 58677 . + . transcript_id "file_1_g12.t1"; gene_id "file_1_g12";
216 sample AUGUSTUS intron 58678 59091 0.01 + . transcript_id "file_1_g12.t1"; gene_id "file_1_g12";
217 sample AUGUSTUS CDS 59092 59204 0.01 + 1 transcript_id "file_1_g12.t1"; gene_id "file_1_g12";
218 sample AUGUSTUS exon 59092 59204 . + . transcript_id "file_1_g12.t1"; gene_id "file_1_g12";
219 sample AUGUSTUS intron 59205 69536 0.01 + . transcript_id "file_1_g12.t1"; gene_id "file_1_g12";
220 sample AUGUSTUS CDS 69537 69745 0.01 + 2 transcript_id "file_1_g12.t1"; gene_id "file_1_g12";
221 sample AUGUSTUS gene 58640 69745 0 + . g12
222 sample AUGUSTUS transcript 58640 69745 . + . g12.t1
223 sample AUGUSTUS exon 69537 69745 . + . transcript_id "file_1_g12.t1"; gene_id "file_1_g12";
224 sample AUGUSTUS stop_codon 69743 69745 . + 0 transcript_id "file_1_g12.t1"; gene_id "file_1_g12";
225 sample AUGUSTUS stop_codon 22811 22813 . - 0 transcript_id "file_1_g5.t1"; gene_id "file_1_g5";
226 sample AUGUSTUS CDS 22811 24038 1 - 1 transcript_id "file_1_g5.t1"; gene_id "file_1_g5";
227 sample AUGUSTUS exon 22811 24038 . - . transcript_id "file_1_g5.t1"; gene_id "file_1_g5";
228 sample AUGUSTUS intron 24039 26107 1 - . transcript_id "file_1_g5.t1"; gene_id "file_1_g5";
229 sample AUGUSTUS CDS 26108 27111 0.98 - 0 transcript_id "file_1_g5.t1"; gene_id "file_1_g5";
230 sample AUGUSTUS gene 22811 27111 0.98 - . g5
231 sample AUGUSTUS transcript 22811 27111 0.98 - . g5.t1
232 sample AUGUSTUS exon 26108 27111 . - . transcript_id "file_1_g5.t1"; gene_id "file_1_g5";
233 sample AUGUSTUS start_codon 27109 27111 . - 0 transcript_id "file_1_g5.t1"; gene_id "file_1_g5";
234 sample AUGUSTUS stop_codon 214566 214568 . - 0 transcript_id "file_1_g25.t1"; gene_id "file_1_g25";
235 sample AUGUSTUS CDS 214566 214811 0.19 - 0 transcript_id "file_1_g25.t1"; gene_id "file_1_g25";
236 sample AUGUSTUS exon 214566 214811 . - . transcript_id "file_1_g25.t1"; gene_id "file_1_g25";
237 sample AUGUSTUS start_codon 214809 214811 . - 0 transcript_id "file_1_g25.t1"; gene_id "file_1_g25";
238 sample AUGUSTUS gene 214566 214811 0.19 - . g25
239 sample AUGUSTUS transcript 214566 214811 0.19 - . g25.t1
240 sample AUGUSTUS stop_codon 45527 45529 . - 0 transcript_id "file_1_g10.t1"; gene_id "file_1_g10";
241 sample AUGUSTUS CDS 45527 46157 0.51 - 1 transcript_id "file_1_g10.t1"; gene_id "file_1_g10";
242 sample AUGUSTUS exon 45527 46157 . - . transcript_id "file_1_g10.t1"; gene_id "file_1_g10";
243 sample AUGUSTUS intron 46158 46752 0.42 - . transcript_id "file_1_g10.t1"; gene_id "file_1_g10";
244 sample AUGUSTUS CDS 46753 47379 0.43 - 1 transcript_id "file_1_g10.t1"; gene_id "file_1_g10";
245 sample AUGUSTUS exon 46753 47379 . - . transcript_id "file_1_g10.t1"; gene_id "file_1_g10";
246 sample AUGUSTUS intron 47380 49616 0.44 - . transcript_id "file_1_g10.t1"; gene_id "file_1_g10";
247 sample AUGUSTUS CDS 49617 49792 0.45 - 0 transcript_id "file_1_g10.t1"; gene_id "file_1_g10";
248 sample AUGUSTUS gene 45527 49792 0.15 - . g10
249 sample AUGUSTUS transcript 45527 49792 0.15 - . g10.t1
250 sample AUGUSTUS exon 49617 49792 . - . transcript_id "file_1_g10.t1"; gene_id "file_1_g10";
251 sample AUGUSTUS start_codon 49790 49792 . - 0 transcript_id "file_1_g10.t1"; gene_id "file_1_g10";
252 sample AUGUSTUS start_codon 159171 159173 . + 0 transcript_id "file_1_g20.t1"; gene_id "file_1_g20";
253 sample AUGUSTUS CDS 159171 164495 0.95 + 0 transcript_id "file_1_g20.t1"; gene_id "file_1_g20";
254 sample AUGUSTUS exon 159171 164495 . + . transcript_id "file_1_g20.t1"; gene_id "file_1_g20";
255 sample AUGUSTUS stop_codon 164493 164495 . + 0 transcript_id "file_1_g20.t1"; gene_id "file_1_g20";
256 sample AUGUSTUS gene 159171 164495 0.95 + . g20
257 sample AUGUSTUS transcript 159171 164495 0.95 + . g20.t1
258 sample AUGUSTUS stop_codon 1092 1094 . - 0 transcript_id "file_1_g1.t1"; gene_id "file_1_g1";
259 sample AUGUSTUS CDS 1092 1364 0.68 - 0 transcript_id "file_1_g1.t1"; gene_id "file_1_g1";
260 sample AUGUSTUS exon 1092 1364 . - . transcript_id "file_1_g1.t1"; gene_id "file_1_g1";
261 sample AUGUSTUS start_codon 1362 1364 . - 0 transcript_id "file_1_g1.t1"; gene_id "file_1_g1";
262 sample AUGUSTUS gene 1092 1364 0.68 - . g1
263 sample AUGUSTUS transcript 1092 1364 0.68 - . g1.t1
264 sample AUGUSTUS start_codon 40692 40694 . + 0 transcript_id "file_1_g9.t1"; gene_id "file_1_g9";
265 sample AUGUSTUS CDS 40692 41193 0.54 + 0 transcript_id "file_1_g9.t1"; gene_id "file_1_g9";
266 sample AUGUSTUS exon 40692 41193 . + . transcript_id "file_1_g9.t1"; gene_id "file_1_g9";
267 sample AUGUSTUS intron 41194 41706 0.54 + . transcript_id "file_1_g9.t1"; gene_id "file_1_g9";
268 sample AUGUSTUS CDS 41707 42103 0.64 + 2 transcript_id "file_1_g9.t1"; gene_id "file_1_g9";
269 sample AUGUSTUS exon 41707 42103 . + . transcript_id "file_1_g9.t1"; gene_id "file_1_g9";
270 sample AUGUSTUS intron 42104 43371 0.21 + . transcript_id "file_1_g9.t1"; gene_id "file_1_g9";
271 sample AUGUSTUS CDS 43372 43609 0.14 + 1 transcript_id "file_1_g9.t1"; gene_id "file_1_g9";
272 sample AUGUSTUS exon 43372 43609 . + . transcript_id "file_1_g9.t1"; gene_id "file_1_g9";
273 sample AUGUSTUS intron 43610 43677 0.46 + . transcript_id "file_1_g9.t1"; gene_id "file_1_g9";
274 sample AUGUSTUS CDS 43678 44130 0.46 + 0 transcript_id "file_1_g9.t1"; gene_id "file_1_g9";
275 sample AUGUSTUS gene 40692 44130 0.05 + . g9
276 sample AUGUSTUS transcript 40692 44130 0.05 + . g9.t1
277 sample AUGUSTUS exon 43678 44130 . + . transcript_id "file_1_g9.t1"; gene_id "file_1_g9";
278 sample AUGUSTUS stop_codon 44128 44130 . + 0 transcript_id "file_1_g9.t1"; gene_id "file_1_g9";
279 sample GeneMark.hmm3 stop_codon 209044 209046 . - 0 gene_id "file_2_21_g"; transcript_id "file_2_21_t";
280 sample GeneMark.hmm3 CDS 209044 210492 . - 0 gene_id "file_2_21_g"; transcript_id "file_2_21_t"; cds_type "file_2_Terminal"; count "file_2_1_1";
281 sample GeneMark.hmm3 gene 209044 210492 . - . gene_id "file_2_21_g"; transcript_id "file_2_21_t";
282 sample GeneMark.hmm3 mRNA 209044 210492 . - . gene_id "file_2_21_g"; transcript_id "file_2_21_t";
283 sample GeneMark.hmm3 start_codon 194065 194067 . + 0 gene_id "file_2_20_g"; transcript_id "file_2_20_t";
284 sample GeneMark.hmm3 CDS 194065 194428 . + 0 gene_id "file_2_20_g"; transcript_id "file_2_20_t"; cds_type "file_2_Initial"; count "file_2_1_2";
285 sample GeneMark.hmm3 intron 194429 194517 . + 1 gene_id "file_2_20_g"; transcript_id "file_2_20_t";
286 sample GeneMark.hmm3 gene 194065 194669 . + . gene_id "file_2_20_g"; transcript_id "file_2_20_t";
287 sample GeneMark.hmm3 mRNA 194065 194669 . + . gene_id "file_2_20_g"; transcript_id "file_2_20_t";
288 sample GeneMark.hmm3 CDS 194518 194669 . + 2 gene_id "file_2_20_g"; transcript_id "file_2_20_t"; cds_type "file_2_Terminal"; count "file_2_2_2";
289 sample GeneMark.hmm3 stop_codon 194667 194669 . + 0 gene_id "file_2_20_g"; transcript_id "file_2_20_t";
290 sample AUGUSTUS start_codon 115274 115276 . + 0 transcript_id "file_1_g16.t1"; gene_id "file_1_g16";
291 sample AUGUSTUS CDS 115274 116488 0.87 + 0 transcript_id "file_1_g16.t1"; gene_id "file_1_g16";
292 sample AUGUSTUS exon 115274 116488 . + . transcript_id "file_1_g16.t1"; gene_id "file_1_g16";
293 sample AUGUSTUS stop_codon 116486 116488 . + 0 transcript_id "file_1_g16.t1"; gene_id "file_1_g16";
294 sample AUGUSTUS gene 115274 116488 0.87 + . g16
295 sample AUGUSTUS transcript 115274 116488 0.87 + . g16.t1
296 sample AUGUSTUS stop_codon 100542 100544 . - 0 transcript_id "file_1_g15.t1"; gene_id "file_1_g15";
297 sample AUGUSTUS CDS 100542 100756 0.3 - 2 transcript_id "file_1_g15.t1"; gene_id "file_1_g15";
298 sample AUGUSTUS exon 100542 100756 . - . transcript_id "file_1_g15.t1"; gene_id "file_1_g15";
299 sample AUGUSTUS intron 100757 102520 0.32 - . transcript_id "file_1_g15.t1"; gene_id "file_1_g15";
300 sample AUGUSTUS CDS 102521 103133 0.26 - 0 transcript_id "file_1_g15.t1"; gene_id "file_1_g15";
301 sample AUGUSTUS exon 102521 103133 . - . transcript_id "file_1_g15.t1"; gene_id "file_1_g15";
302 sample AUGUSTUS intron 103134 103264 0.25 - . transcript_id "file_1_g15.t1"; gene_id "file_1_g15";
303 sample AUGUSTUS CDS 103265 104819 0.09 - 1 transcript_id "file_1_g15.t1"; gene_id "file_1_g15";
304 sample AUGUSTUS exon 103265 104819 . - . transcript_id "file_1_g15.t1"; gene_id "file_1_g15";
305 sample AUGUSTUS intron 104820 108228 0.15 - . transcript_id "file_1_g15.t1"; gene_id "file_1_g15";
306 sample AUGUSTUS CDS 108229 108299 0.42 - 0 transcript_id "file_1_g15.t1"; gene_id "file_1_g15";
307 sample AUGUSTUS gene 100542 108299 0.02 - . g15
308 sample AUGUSTUS transcript 100542 108299 0.02 - . g15.t1
309 sample AUGUSTUS exon 108229 108299 . - . transcript_id "file_1_g15.t1"; gene_id "file_1_g15";
310 sample AUGUSTUS start_codon 108297 108299 . - 0 transcript_id "file_1_g15.t1"; gene_id "file_1_g15";
311 sample GeneMark.hmm3 stop_codon 45489 45491 . - 0 gene_id "file_2_8_g"; transcript_id "file_2_8_t";
312 sample GeneMark.hmm3 CDS 45489 45611 . - 0 gene_id "file_2_8_g"; transcript_id "file_2_8_t"; cds_type "file_2_Terminal"; count "file_2_2_2";
313 sample GeneMark.hmm3 intron 45612 45727 . - 0 gene_id "file_2_8_g"; transcript_id "file_2_8_t";
314 sample GeneMark.hmm3 gene 45489 46114 . - . gene_id "file_2_8_g"; transcript_id "file_2_8_t";
315 sample GeneMark.hmm3 mRNA 45489 46114 . - . gene_id "file_2_8_g"; transcript_id "file_2_8_t";
316 sample GeneMark.hmm3 CDS 45728 46114 . - 0 gene_id "file_2_8_g"; transcript_id "file_2_8_t"; cds_type "file_2_Initial"; count "file_2_1_2";
317 sample GeneMark.hmm3 start_codon 46112 46114 . - 0 gene_id "file_2_8_g"; transcript_id "file_2_8_t";
318 sample AUGUSTUS stop_codon 27589 27591 . - 0 transcript_id "file_1_g6.t1"; gene_id "file_1_g6";
319 sample AUGUSTUS CDS 27589 28143 0.2 - 0 transcript_id "file_1_g6.t1"; gene_id "file_1_g6";
320 sample AUGUSTUS exon 27589 28143 . - . transcript_id "file_1_g6.t1"; gene_id "file_1_g6";
321 sample AUGUSTUS start_codon 28141 28143 . - 0 transcript_id "file_1_g6.t1"; gene_id "file_1_g6";
322 sample AUGUSTUS gene 27589 28143 0.2 - . g6
323 sample AUGUSTUS transcript 27589 28143 0.2 - . g6.t1
324 sample GeneMark.hmm3 stop_codon 56484 56486 . - 0 gene_id "file_2_10_g"; transcript_id "file_2_10_t";
325 sample GeneMark.hmm3 CDS 56484 56885 . - 0 gene_id "file_2_10_g"; transcript_id "file_2_10_t"; cds_type "file_2_Single"; count "file_2_1_1";
326 sample GeneMark.hmm3 gene 56484 56885 . - . gene_id "file_2_10_g"; transcript_id "file_2_10_t";
327 sample GeneMark.hmm3 mRNA 56484 56885 . - . gene_id "file_2_10_g"; transcript_id "file_2_10_t";
328 sample GeneMark.hmm3 start_codon 56883 56885 . - 0 gene_id "file_2_10_g"; transcript_id "file_2_10_t";
329 sample AUGUSTUS stop_codon 56484 56486 . - 0 transcript_id "file_1_g11.t1"; gene_id "file_1_g11";
330 sample AUGUSTUS CDS 56484 56821 0.37 - 2 transcript_id "file_1_g11.t1"; gene_id "file_1_g11";
331 sample AUGUSTUS exon 56484 56821 . - . transcript_id "file_1_g11.t1"; gene_id "file_1_g11";
332 sample AUGUSTUS intron 56822 57445 0.37 - . transcript_id "file_1_g11.t1"; gene_id "file_1_g11";
333 sample AUGUSTUS CDS 57446 57566 0.07 - 0 transcript_id "file_1_g11.t1"; gene_id "file_1_g11";
334 sample AUGUSTUS gene 56484 57566 0.06 - . g11
335 sample AUGUSTUS transcript 56484 57566 0.06 - . g11.t1
336 sample AUGUSTUS exon 57446 57566 . - . transcript_id "file_1_g11.t1"; gene_id "file_1_g11";
337 sample AUGUSTUS start_codon 57564 57566 . - 0 transcript_id "file_1_g11.t1"; gene_id "file_1_g11";
338 sample GeneMark.hmm3 start_codon 40638 40640 . + 0 gene_id "file_2_7_g"; transcript_id "file_2_7_t";
339 sample GeneMark.hmm3 CDS 40638 41193 . + 0 gene_id "file_2_7_g"; transcript_id "file_2_7_t"; cds_type "file_2_Initial"; count "file_2_1_2";
340 sample GeneMark.hmm3 intron 41194 43606 . + 1 gene_id "file_2_7_g"; transcript_id "file_2_7_t";
341 sample GeneMark.hmm3 gene 40638 44130 . + . gene_id "file_2_7_g"; transcript_id "file_2_7_t";
342 sample GeneMark.hmm3 mRNA 40638 44130 . + . gene_id "file_2_7_g"; transcript_id "file_2_7_t";
343 sample GeneMark.hmm3 CDS 43607 44130 . + 2 gene_id "file_2_7_g"; transcript_id "file_2_7_t"; cds_type "file_2_Terminal"; count "file_2_2_2";
344 sample GeneMark.hmm3 stop_codon 44128 44130 . + 0 gene_id "file_2_7_g"; transcript_id "file_2_7_t";
345 sample GeneMark.hmm3 stop_codon 74172 74174 . - 0 gene_id "file_2_11_g"; transcript_id "file_2_11_t";
346 sample GeneMark.hmm3 CDS 74172 74318 . - 0 gene_id "file_2_11_g"; transcript_id "file_2_11_t"; cds_type "file_2_Terminal"; count "file_2_2_2";
347 sample GeneMark.hmm3 intron 74319 79516 . - 0 gene_id "file_2_11_g"; transcript_id "file_2_11_t";
348 sample GeneMark.hmm3 gene 74172 80527 . - . gene_id "file_2_11_g"; transcript_id "file_2_11_t";
349 sample GeneMark.hmm3 mRNA 74172 80527 . - . gene_id "file_2_11_g"; transcript_id "file_2_11_t";
350 sample GeneMark.hmm3 CDS 79517 80527 . - 0 gene_id "file_2_11_g"; transcript_id "file_2_11_t"; cds_type "file_2_Initial"; count "file_2_1_2";
351 sample GeneMark.hmm3 start_codon 80525 80527 . - 0 gene_id "file_2_11_g"; transcript_id "file_2_11_t";
352 sample GeneMark.hmm3 stop_codon 46749 46751 . - 0 gene_id "file_2_9_g"; transcript_id "file_2_9_t";
353 sample GeneMark.hmm3 CDS 46749 47339 . - 0 gene_id "file_2_9_g"; transcript_id "file_2_9_t"; cds_type "file_2_Single"; count "file_2_1_1";
354 sample GeneMark.hmm3 gene 46749 47339 . - . gene_id "file_2_9_g"; transcript_id "file_2_9_t";
355 sample GeneMark.hmm3 mRNA 46749 47339 . - . gene_id "file_2_9_g"; transcript_id "file_2_9_t";
356 sample GeneMark.hmm3 start_codon 47337 47339 . - 0 gene_id "file_2_9_g"; transcript_id "file_2_9_t";
357 sample AUGUSTUS stop_codon 73851 73853 . - 0 transcript_id "file_1_g13.t1"; gene_id "file_1_g13";
358 sample AUGUSTUS CDS 73851 74116 0.56 - 2 transcript_id "file_1_g13.t1"; gene_id "file_1_g13";
359 sample AUGUSTUS exon 73851 74116 . - . transcript_id "file_1_g13.t1"; gene_id "file_1_g13";
360 sample AUGUSTUS intron 74117 79000 . - . transcript_id "file_1_g13.t1"; gene_id "file_1_g13";
361 sample AUGUSTUS CDS 79001 79010 0.01 - 0 transcript_id "file_1_g13.t1"; gene_id "file_1_g13";
362 sample AUGUSTUS gene 73851 79010 0 - . g13
363 sample AUGUSTUS transcript 73851 79010 . - . g13.t1
364 sample AUGUSTUS exon 79001 79010 . - . transcript_id "file_1_g13.t1"; gene_id "file_1_g13";
365 sample AUGUSTUS start_codon 79008 79010 . - 0 transcript_id "file_1_g13.t1"; gene_id "file_1_g13";
366 sample GeneMark.hmm3 CDS 2258 3224 . + 1 gene_id "file_2_1_g"; transcript_id "file_2_1_t"; cds_type "file_2_Internal"; count "file_2_1_3";
367 sample GeneMark.hmm3 intron 3225 3283 . + 0 gene_id "file_2_1_g"; transcript_id "file_2_1_t";
368 sample GeneMark.hmm3 CDS 3284 3755 . + 0 gene_id "file_2_1_g"; transcript_id "file_2_1_t"; cds_type "file_2_Internal"; count "file_2_2_3";
369 sample GeneMark.hmm3 intron 3756 4934 . + 1 gene_id "file_2_1_g"; transcript_id "file_2_1_t";
370 sample GeneMark.hmm3 gene 2258 5707 . + . gene_id "file_2_1_g"; transcript_id "file_2_1_t";
371 sample GeneMark.hmm3 mRNA 2258 5707 . + . gene_id "file_2_1_g"; transcript_id "file_2_1_t";
372 sample GeneMark.hmm3 CDS 4935 5707 . + 2 gene_id "file_2_1_g"; transcript_id "file_2_1_t"; cds_type "file_2_Terminal"; count "file_2_3_3";
373 sample GeneMark.hmm3 stop_codon 5705 5707 . + 0 gene_id "file_2_1_g"; transcript_id "file_2_1_t";
374 sample AUGUSTUS start_codon 167121 167123 . + 0 transcript_id "file_1_g21.t1"; gene_id "file_1_g21";
375 sample AUGUSTUS CDS 167121 168360 1 + 0 transcript_id "file_1_g21.t1"; gene_id "file_1_g21";
376 sample AUGUSTUS exon 167121 168360 . + . transcript_id "file_1_g21.t1"; gene_id "file_1_g21";
377 sample AUGUSTUS intron 168361 168721 1 + . transcript_id "file_1_g21.t1"; gene_id "file_1_g21";
378 sample AUGUSTUS CDS 168722 169167 1 + 2 transcript_id "file_1_g21.t1"; gene_id "file_1_g21";
379 sample AUGUSTUS exon 168722 169167 . + . transcript_id "file_1_g21.t1"; gene_id "file_1_g21";
380 sample AUGUSTUS intron 169168 172584 0.87 + . transcript_id "file_1_g21.t1"; gene_id "file_1_g21";
381 sample AUGUSTUS CDS 172585 172957 0.81 + 0 transcript_id "file_1_g21.t1"; gene_id "file_1_g21";
382 sample AUGUSTUS exon 172585 172957 . + . transcript_id "file_1_g21.t1"; gene_id "file_1_g21";
383 sample AUGUSTUS intron 172958 180019 0.41 + . transcript_id "file_1_g21.t1"; gene_id "file_1_g21";
384 sample AUGUSTUS CDS 180020 180579 0.57 + 2 transcript_id "file_1_g21.t1"; gene_id "file_1_g21";
385 sample AUGUSTUS gene 167121 180579 0.22 + . g21
386 sample AUGUSTUS transcript 167121 180579 0.22 + . g21.t1
387 sample AUGUSTUS exon 180020 180579 . + . transcript_id "file_1_g21.t1"; gene_id "file_1_g21";
388 sample AUGUSTUS stop_codon 180577 180579 . + 0 transcript_id "file_1_g21.t1"; gene_id "file_1_g21";
389 sample AUGUSTUS stop_codon 14247 14249 . - 0 transcript_id "file_1_g4.t1"; gene_id "file_1_g4";
390 sample AUGUSTUS CDS 14247 14659 0.67 - 2 transcript_id "file_1_g4.t1"; gene_id "file_1_g4";
391 sample AUGUSTUS exon 14247 14659 . - . transcript_id "file_1_g4.t1"; gene_id "file_1_g4";
392 sample AUGUSTUS intron 14660 14793 0.68 - . transcript_id "file_1_g4.t1"; gene_id "file_1_g4";
393 sample AUGUSTUS CDS 14794 14952 1 - 2 transcript_id "file_1_g4.t1"; gene_id "file_1_g4";
394 sample AUGUSTUS exon 14794 14952 . - . transcript_id "file_1_g4.t1"; gene_id "file_1_g4";
395 sample AUGUSTUS intron 14953 15360 1 - . transcript_id "file_1_g4.t1"; gene_id "file_1_g4";
396 sample AUGUSTUS CDS 15361 17164 1 - 0 transcript_id "file_1_g4.t1"; gene_id "file_1_g4";
397 sample AUGUSTUS exon 15361 17164 . - . transcript_id "file_1_g4.t1"; gene_id "file_1_g4";
398 sample AUGUSTUS intron 17165 17295 1 - . transcript_id "file_1_g4.t1"; gene_id "file_1_g4";
399 sample AUGUSTUS CDS 17296 18096 0.99 - 0 transcript_id "file_1_g4.t1"; gene_id "file_1_g4";
400 sample AUGUSTUS exon 17296 18096 . - . transcript_id "file_1_g4.t1"; gene_id "file_1_g4";
401 sample AUGUSTUS intron 18097 18220 0.99 - . transcript_id "file_1_g4.t1"; gene_id "file_1_g4";
402 sample AUGUSTUS CDS 18221 18259 0.99 - 0 transcript_id "file_1_g4.t1"; gene_id "file_1_g4";
403 sample AUGUSTUS exon 18221 18259 . - . transcript_id "file_1_g4.t1"; gene_id "file_1_g4";
404 sample AUGUSTUS intron 18260 18462 0.95 - . transcript_id "file_1_g4.t1"; gene_id "file_1_g4";
405 sample AUGUSTUS CDS 18463 19499 0.99 - 2 transcript_id "file_1_g4.t1"; gene_id "file_1_g4";
406 sample AUGUSTUS exon 18463 19499 . - . transcript_id "file_1_g4.t1"; gene_id "file_1_g4";
407 sample AUGUSTUS intron 19500 19606 1 - . transcript_id "file_1_g4.t1"; gene_id "file_1_g4";
408 sample AUGUSTUS CDS 19607 21542 1 - 0 transcript_id "file_1_g4.t1"; gene_id "file_1_g4";
409 sample AUGUSTUS gene 14247 21542 0.62 - . g4
410 sample AUGUSTUS transcript 14247 21542 0.62 - . g4.t1
411 sample AUGUSTUS exon 19607 21542 . - . transcript_id "file_1_g4.t1"; gene_id "file_1_g4";
412 sample AUGUSTUS start_codon 21540 21542 . - 0 transcript_id "file_1_g4.t1"; gene_id "file_1_g4";
413 sample GeneMark.hmm3 start_codon 153389 153391 . + 0 gene_id "file_2_17_g"; transcript_id "file_2_17_t";
414 sample GeneMark.hmm3 CDS 153389 159010 . + 0 gene_id "file_2_17_g"; transcript_id "file_2_17_t"; cds_type "file_2_Initial"; count "file_2_1_2";
415 sample GeneMark.hmm3 intron 159011 159116 . + 0 gene_id "file_2_17_g"; transcript_id "file_2_17_t";
416 sample GeneMark.hmm3 gene 153389 164495 . + . gene_id "file_2_17_g"; transcript_id "file_2_17_t";
417 sample GeneMark.hmm3 mRNA 153389 164495 . + . gene_id "file_2_17_g"; transcript_id "file_2_17_t";
418 sample GeneMark.hmm3 CDS 159117 164495 . + 0 gene_id "file_2_17_g"; transcript_id "file_2_17_t"; cds_type "file_2_Terminal"; count "file_2_2_2";
419 sample GeneMark.hmm3 stop_codon 164493 164495 . + 0 gene_id "file_2_17_g"; transcript_id "file_2_17_t";
420 sample GeneMark.hmm3 stop_codon 97476 97478 . - 0 gene_id "file_2_13_g"; transcript_id "file_2_13_t";
421 sample GeneMark.hmm3 CDS 97476 97573 . - 2 gene_id "file_2_13_g"; transcript_id "file_2_13_t"; cds_type "file_2_Terminal"; count "file_2_5_5";
422 sample GeneMark.hmm3 intron 97574 102520 . - 1 gene_id "file_2_13_g"; transcript_id "file_2_13_t";
423 sample GeneMark.hmm3 CDS 102521 103151 . - 0 gene_id "file_2_13_g"; transcript_id "file_2_13_t"; cds_type "file_2_Internal"; count "file_2_4_5";
424 sample GeneMark.hmm3 intron 103152 103222 . - 0 gene_id "file_2_13_g"; transcript_id "file_2_13_t";
425 sample GeneMark.hmm3 CDS 103223 103812 . - 2 gene_id "file_2_13_g"; transcript_id "file_2_13_t"; cds_type "file_2_Internal"; count "file_2_3_5";
426 sample GeneMark.hmm3 intron 103813 111230 . - 1 gene_id "file_2_13_g"; transcript_id "file_2_13_t";
427 sample GeneMark.hmm3 CDS 111231 111342 . - 0 gene_id "file_2_13_g"; transcript_id "file_2_13_t"; cds_type "file_2_Internal"; count "file_2_2_5";
428 sample GeneMark.hmm3 intron 111343 113595 . - 0 gene_id "file_2_13_g"; transcript_id "file_2_13_t";
429 sample GeneMark.hmm3 gene 97476 113919 . - . gene_id "file_2_13_g"; transcript_id "file_2_13_t";
430 sample GeneMark.hmm3 mRNA 97476 113919 . - . gene_id "file_2_13_g"; transcript_id "file_2_13_t";
431 sample GeneMark.hmm3 CDS 113596 113919 . - 0 gene_id "file_2_13_g"; transcript_id "file_2_13_t"; cds_type "file_2_Initial"; count "file_2_1_5";
432 sample GeneMark.hmm3 start_codon 113917 113919 . - 0 gene_id "file_2_13_g"; transcript_id "file_2_13_t";
433 sample4 AUGUSTUS stop_codon 1092 1094 . - 0 transcript_id "file_1_g26.t1"; gene_id "file_1_g26";
434 sample4 AUGUSTUS CDS 1092 1364 0.76 - 0 transcript_id "file_1_g26.t1"; gene_id "file_1_g26";
435 sample4 AUGUSTUS exon 1092 1364 . - . transcript_id "file_1_g26.t1"; gene_id "file_1_g26";
436 sample4 AUGUSTUS start_codon 1362 1364 . - 0 transcript_id "file_1_g26.t1"; gene_id "file_1_g26";
437 sample4 AUGUSTUS gene 1092 1364 0.76 - . g26
438 sample4 AUGUSTUS transcript 1092 1364 0.76 - . g26.t1
439 sample AUGUSTUS stop_codon 34843 34845 . - 0 transcript_id "file_1_g7.t1"; gene_id "file_1_g7";
440 sample AUGUSTUS CDS 34843 35679 0.35 - 0 transcript_id "file_1_g7.t1"; gene_id "file_1_g7";
441 sample AUGUSTUS exon 34843 35679 . - . transcript_id "file_1_g7.t1"; gene_id "file_1_g7";
442 sample AUGUSTUS start_codon 35677 35679 . - 0 transcript_id "file_1_g7.t1"; gene_id "file_1_g7";
443 sample AUGUSTUS gene 34843 35679 0.35 - . g7
444 sample AUGUSTUS transcript 34843 35679 0.35 - . g7.t1
445 sample AUGUSTUS stop_codon 40166 40168 . - 0 transcript_id "file_1_g8.t1"; gene_id "file_1_g8";
446 sample AUGUSTUS CDS 40166 40531 0.99 - 0 transcript_id "file_1_g8.t1"; gene_id "file_1_g8";
447 sample AUGUSTUS exon 40166 40531 . - . transcript_id "file_1_g8.t1"; gene_id "file_1_g8";
448 sample AUGUSTUS start_codon 40529 40531 . - 0 transcript_id "file_1_g8.t1"; gene_id "file_1_g8";
449 sample AUGUSTUS gene 40166 40531 0.99 - . g8
450 sample AUGUSTUS transcript 40166 40531 0.99 - . g8.t1
451 sample4 AUGUSTUS start_codon 2126 2128 . + 0 transcript_id "file_1_g27.t1"; gene_id "file_1_g27";
452 sample4 AUGUSTUS CDS 2126 2199 1 + 0 transcript_id "file_1_g27.t1"; gene_id "file_1_g27";
453 sample4 AUGUSTUS exon 2126 2199 . + . transcript_id "file_1_g27.t1"; gene_id "file_1_g27";
454 sample4 AUGUSTUS intron 2200 2257 1 + . transcript_id "file_1_g27.t1"; gene_id "file_1_g27";
455 sample4 AUGUSTUS CDS 2258 3224 0.45 + 1 transcript_id "file_1_g27.t1"; gene_id "file_1_g27";
456 sample4 AUGUSTUS exon 2258 3224 . + . transcript_id "file_1_g27.t1"; gene_id "file_1_g27";
457 sample4 AUGUSTUS intron 3225 3283 0.33 + . transcript_id "file_1_g27.t1"; gene_id "file_1_g27";
458 sample4 AUGUSTUS CDS 3284 3512 0.14 + 0 transcript_id "file_1_g27.t1"; gene_id "file_1_g27";
459 sample4 AUGUSTUS exon 3284 3512 . + . transcript_id "file_1_g27.t1"; gene_id "file_1_g27";
460 sample4 AUGUSTUS intron 3513 3807 0.22 + . transcript_id "file_1_g27.t1"; gene_id "file_1_g27";
461 sample4 AUGUSTUS CDS 3808 3863 0.59 + 2 transcript_id "file_1_g27.t1"; gene_id "file_1_g27";
462 sample4 AUGUSTUS gene 2126 3863 0.07 + . g27
463 sample4 AUGUSTUS transcript 2126 3863 0.07 + . g27.t1
464 sample4 AUGUSTUS exon 3808 3863 . + . transcript_id "file_1_g27.t1"; gene_id "file_1_g27";
465 sample4 AUGUSTUS stop_codon 3861 3863 . + 0 transcript_id "file_1_g27.t1"; gene_id "file_1_g27";