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comparison braker3.xml @ 1:bd103884a09c draft

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planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/braker commit 09f76e16ba04767a20c93a5237b140d9148cdedd
author genouest
date Tue, 10 Oct 2023 12:25:53 +0000
parents 3c0865d1172f
children bbe51a1c2b6b
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0:3c0865d1172f 1:bd103884a09c
80 #if $dev.gm_max_intergenic: 80 #if $dev.gm_max_intergenic:
81 --gm_max_intergenic $dev.gm_max_intergenic 81 --gm_max_intergenic $dev.gm_max_intergenic
82 #end if 82 #end if
83 83
84 --threads \${GALAXY_SLOTS:-2} 84 --threads \${GALAXY_SLOTS:-2}
85 --useexisting
85 ]]></command> 86 ]]></command>
86 <inputs> 87 <inputs>
87 <param name="genemark_license" type="data" format="txt" label="GeneMark license file" help="Braker uses GeneMark, which is not a free software, to use it download and unzip a license from http://topaz.gatech.edu/GeneMark/license_download.cgi (ES/ET/EP version). GeneMark needs to be installed manually by Galaxy administrators." /> 88 <param name="genemark_license" type="data" format="txt" label="GeneMark license file" help="Braker uses GeneMark, which is not a free software, to use it download and unzip a license from http://topaz.gatech.edu/GeneMark/license_download.cgi (ES/ET/EP version). GeneMark needs to be installed manually by Galaxy administrators." />
88 89
89 <param argument="--genome" type="data" format="fasta" label="Assembly to annotate" help="The assembly should preferably be soft-masked (with RepeatMasker for example)" /> 90 <param argument="--genome" type="data" format="fasta" label="Assembly to annotate" help="The assembly should preferably be soft-masked (with RepeatMasker for example)" />