Mercurial > repos > genouest > braker3
diff test-data/out_genome/braker.gff3 @ 0:3c0865d1172f draft
planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/braker commit d6e73c0417506d93c905b4aeb77d92350b662fbb
| author | genouest |
|---|---|
| date | Wed, 06 Sep 2023 09:50:28 +0000 |
| parents | |
| children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/out_genome/braker.gff3 Wed Sep 06 09:50:28 2023 +0000 @@ -0,0 +1,280 @@ +sample AUGUSTUS start_codon 40692 40694 . + 0 ID=file_1_g9.t1.start1;Parent=file_1_g9.t1; +sample AUGUSTUS CDS 40692 41193 0.54 + 0 ID=file_1_g9.t1.CDS1;Parent=file_1_g9.t1; +sample AUGUSTUS exon 40692 41193 . + . ID=file_1_g9.t1.exon1;Parent=file_1_g9.t1; +sample AUGUSTUS intron 41194 41706 0.54 + . ID=file_1_g9.t1.intron1;Parent=file_1_g9.t1; +sample AUGUSTUS CDS 41707 42103 0.64 + 2 ID=file_1_g9.t1.CDS2;Parent=file_1_g9.t1; +sample AUGUSTUS exon 41707 42103 . + . ID=file_1_g9.t1.exon2;Parent=file_1_g9.t1; +sample AUGUSTUS intron 42104 43371 0.21 + . ID=file_1_g9.t1.intron2;Parent=file_1_g9.t1; +sample AUGUSTUS CDS 43372 43609 0.14 + 1 ID=file_1_g9.t1.CDS3;Parent=file_1_g9.t1; +sample AUGUSTUS exon 43372 43609 . + . ID=file_1_g9.t1.exon3;Parent=file_1_g9.t1; +sample AUGUSTUS intron 43610 43677 0.46 + . ID=file_1_g9.t1.intron3;Parent=file_1_g9.t1; +sample AUGUSTUS CDS 43678 44130 0.46 + 0 ID=file_1_g9.t1.CDS4;Parent=file_1_g9.t1; +sample AUGUSTUS exon 43678 44130 . + . ID=file_1_g9.t1.exon4;Parent=file_1_g9.t1; +sample AUGUSTUS stop_codon 44128 44130 . + 0 ID=file_1_g9.t1.stop1;Parent=file_1_g9.t1; +sample4 AUGUSTUS stop_codon 1092 1094 . - 0 ID=file_1_g26.t1.stop1;Parent=file_1_g26.t1; +sample4 AUGUSTUS CDS 1092 1364 0.76 - 0 ID=file_1_g26.t1.CDS1;Parent=file_1_g26.t1; +sample4 AUGUSTUS exon 1092 1364 . - . ID=file_1_g26.t1.exon1;Parent=file_1_g26.t1; +sample4 AUGUSTUS start_codon 1362 1364 . - 0 ID=file_1_g26.t1.start1;Parent=file_1_g26.t1; +sample AUGUSTUS start_codon 167121 167123 . + 0 ID=file_1_g21.t1.start1;Parent=file_1_g21.t1; +sample AUGUSTUS CDS 167121 168360 1 + 0 ID=file_1_g21.t1.CDS1;Parent=file_1_g21.t1; +sample AUGUSTUS exon 167121 168360 . + . ID=file_1_g21.t1.exon1;Parent=file_1_g21.t1; +sample AUGUSTUS intron 168361 168721 1 + . ID=file_1_g21.t1.intron1;Parent=file_1_g21.t1; +sample AUGUSTUS CDS 168722 169167 1 + 2 ID=file_1_g21.t1.CDS2;Parent=file_1_g21.t1; +sample AUGUSTUS exon 168722 169167 . + . ID=file_1_g21.t1.exon2;Parent=file_1_g21.t1; +sample AUGUSTUS intron 169168 172584 0.87 + . ID=file_1_g21.t1.intron2;Parent=file_1_g21.t1; +sample AUGUSTUS CDS 172585 172957 0.81 + 0 ID=file_1_g21.t1.CDS3;Parent=file_1_g21.t1; +sample AUGUSTUS exon 172585 172957 . + . ID=file_1_g21.t1.exon3;Parent=file_1_g21.t1; +sample AUGUSTUS intron 172958 180019 0.41 + . ID=file_1_g21.t1.intron3;Parent=file_1_g21.t1; +sample AUGUSTUS CDS 180020 180579 0.57 + 2 ID=file_1_g21.t1.CDS4;Parent=file_1_g21.t1; +sample AUGUSTUS exon 180020 180579 . + . ID=file_1_g21.t1.exon4;Parent=file_1_g21.t1; +sample AUGUSTUS stop_codon 180577 180579 . + 0 ID=file_1_g21.t1.stop1;Parent=file_1_g21.t1; +sample AUGUSTUS start_codon 119778 119780 . + 0 ID=file_1_g18.t1.start1;Parent=file_1_g18.t1; +sample AUGUSTUS CDS 119778 120378 1 + 0 ID=file_1_g18.t1.CDS1;Parent=file_1_g18.t1; +sample AUGUSTUS exon 119778 120378 . + . ID=file_1_g18.t1.exon1;Parent=file_1_g18.t1; +sample AUGUSTUS intron 120379 123327 0.98 + . ID=file_1_g18.t1.intron1;Parent=file_1_g18.t1; +sample AUGUSTUS CDS 123328 123512 0.99 + 2 ID=file_1_g18.t1.CDS2;Parent=file_1_g18.t1; +sample AUGUSTUS exon 123328 123512 . + . ID=file_1_g18.t1.exon2;Parent=file_1_g18.t1; +sample AUGUSTUS intron 123513 133208 0.5 + . ID=file_1_g18.t1.intron2;Parent=file_1_g18.t1; +sample AUGUSTUS CDS 133209 134539 1 + 0 ID=file_1_g18.t1.CDS3;Parent=file_1_g18.t1; +sample AUGUSTUS exon 133209 134539 . + . ID=file_1_g18.t1.exon3;Parent=file_1_g18.t1; +sample AUGUSTUS intron 134540 134667 1 + . ID=file_1_g18.t1.intron3;Parent=file_1_g18.t1; +sample AUGUSTUS CDS 134668 135510 1 + 1 ID=file_1_g18.t1.CDS4;Parent=file_1_g18.t1; +sample AUGUSTUS exon 134668 135510 . + . ID=file_1_g18.t1.exon4;Parent=file_1_g18.t1; +sample AUGUSTUS intron 135511 135568 1 + . ID=file_1_g18.t1.intron4;Parent=file_1_g18.t1; +sample AUGUSTUS CDS 135569 136346 0.99 + 1 ID=file_1_g18.t1.CDS5;Parent=file_1_g18.t1; +sample AUGUSTUS exon 135569 136346 . + . ID=file_1_g18.t1.exon5;Parent=file_1_g18.t1; +sample AUGUSTUS stop_codon 136344 136346 . + 0 ID=file_1_g18.t1.stop1;Parent=file_1_g18.t1; +sample AUGUSTUS start_codon 79526 79528 . + 0 ID=file_1_g14.t1.start1;Parent=file_1_g14.t1; +sample AUGUSTUS CDS 79526 80474 0.4 + 0 ID=file_1_g14.t1.CDS1;Parent=file_1_g14.t1; +sample AUGUSTUS exon 79526 80474 . + . ID=file_1_g14.t1.exon1;Parent=file_1_g14.t1; +sample AUGUSTUS intron 80475 87860 0.49 + . ID=file_1_g14.t1.intron1;Parent=file_1_g14.t1; +sample AUGUSTUS CDS 87861 88125 0.39 + 2 ID=file_1_g14.t1.CDS2;Parent=file_1_g14.t1; +sample AUGUSTUS exon 87861 88125 . + . ID=file_1_g14.t1.exon2;Parent=file_1_g14.t1; +sample AUGUSTUS intron 88126 92148 0.19 + . ID=file_1_g14.t1.intron2;Parent=file_1_g14.t1; +sample AUGUSTUS CDS 92149 92252 0.17 + 1 ID=file_1_g14.t1.CDS3;Parent=file_1_g14.t1; +sample AUGUSTUS exon 92149 92252 . + . ID=file_1_g14.t1.exon3;Parent=file_1_g14.t1; +sample AUGUSTUS intron 92253 94562 0.19 + . ID=file_1_g14.t1.intron3;Parent=file_1_g14.t1; +sample AUGUSTUS CDS 94563 94732 0.96 + 2 ID=file_1_g14.t1.CDS4;Parent=file_1_g14.t1; +sample AUGUSTUS exon 94563 94732 . + . ID=file_1_g14.t1.exon4;Parent=file_1_g14.t1; +sample AUGUSTUS intron 94733 94872 0.91 + . ID=file_1_g14.t1.intron4;Parent=file_1_g14.t1; +sample AUGUSTUS CDS 94873 95333 0.79 + 0 ID=file_1_g14.t1.CDS5;Parent=file_1_g14.t1; +sample AUGUSTUS exon 94873 95333 . + . ID=file_1_g14.t1.exon5;Parent=file_1_g14.t1; +sample AUGUSTUS intron 95334 95584 0.51 + . ID=file_1_g14.t1.intron5;Parent=file_1_g14.t1; +sample AUGUSTUS CDS 95585 95762 0.35 + 1 ID=file_1_g14.t1.CDS6;Parent=file_1_g14.t1; +sample AUGUSTUS exon 95585 95762 . + . ID=file_1_g14.t1.exon6;Parent=file_1_g14.t1; +sample AUGUSTUS stop_codon 95760 95762 . + 0 ID=file_1_g14.t1.stop1;Parent=file_1_g14.t1; +sample AUGUSTUS stop_codon 4248 4250 . - 0 ID=file_1_g3.t1.stop1;Parent=file_1_g3.t1; +sample AUGUSTUS CDS 4248 4738 0.48 - 2 ID=file_1_g3.t1.CDS1;Parent=file_1_g3.t1; +sample AUGUSTUS exon 4248 4738 . - . ID=file_1_g3.t1.exon1;Parent=file_1_g3.t1; +sample AUGUSTUS intron 4739 4929 0.48 - . ID=file_1_g3.t1.intron1;Parent=file_1_g3.t1; +sample AUGUSTUS CDS 4930 5539 0.45 - 0 ID=file_1_g3.t1.CDS2;Parent=file_1_g3.t1; +sample AUGUSTUS exon 4930 5539 . - . ID=file_1_g3.t1.exon2;Parent=file_1_g3.t1; +sample AUGUSTUS intron 5540 6038 0.26 - . ID=file_1_g3.t1.intron2;Parent=file_1_g3.t1; +sample AUGUSTUS CDS 6039 6450 0.42 - 1 ID=file_1_g3.t1.CDS3;Parent=file_1_g3.t1; +sample AUGUSTUS exon 6039 6450 . - . ID=file_1_g3.t1.exon3;Parent=file_1_g3.t1; +sample AUGUSTUS intron 6451 7715 0.85 - . ID=file_1_g3.t1.intron3;Parent=file_1_g3.t1; +sample AUGUSTUS CDS 7716 8362 0.49 - 0 ID=file_1_g3.t1.CDS4;Parent=file_1_g3.t1; +sample AUGUSTUS exon 7716 8362 . - . ID=file_1_g3.t1.exon4;Parent=file_1_g3.t1; +sample AUGUSTUS intron 8363 8725 0.31 - . ID=file_1_g3.t1.intron4;Parent=file_1_g3.t1; +sample AUGUSTUS CDS 8726 10495 0.23 - 0 ID=file_1_g3.t1.CDS5;Parent=file_1_g3.t1; +sample AUGUSTUS exon 8726 10495 . - . ID=file_1_g3.t1.exon5;Parent=file_1_g3.t1; +sample AUGUSTUS intron 10496 10662 0.22 - . ID=file_1_g3.t1.intron5;Parent=file_1_g3.t1; +sample AUGUSTUS CDS 10663 10794 0.45 - 0 ID=file_1_g3.t1.CDS6;Parent=file_1_g3.t1; +sample AUGUSTUS exon 10663 10794 . - . ID=file_1_g3.t1.exon6;Parent=file_1_g3.t1; +sample AUGUSTUS intron 10795 10852 0.95 - . ID=file_1_g3.t1.intron6;Parent=file_1_g3.t1; +sample AUGUSTUS CDS 10853 11104 0.72 - 0 ID=file_1_g3.t1.CDS7;Parent=file_1_g3.t1; +sample AUGUSTUS exon 10853 11104 . - . ID=file_1_g3.t1.exon7;Parent=file_1_g3.t1; +sample AUGUSTUS start_codon 11102 11104 . - 0 ID=file_1_g3.t1.start1;Parent=file_1_g3.t1; +sample AUGUSTUS stop_codon 34843 34845 . - 0 ID=file_1_g7.t1.stop1;Parent=file_1_g7.t1; +sample AUGUSTUS CDS 34843 35679 0.35 - 0 ID=file_1_g7.t1.CDS1;Parent=file_1_g7.t1; +sample AUGUSTUS exon 34843 35679 . - . ID=file_1_g7.t1.exon1;Parent=file_1_g7.t1; +sample AUGUSTUS start_codon 35677 35679 . - 0 ID=file_1_g7.t1.start1;Parent=file_1_g7.t1; +sample AUGUSTUS start_codon 194065 194067 . + 0 ID=file_1_g23.t1.start1;Parent=file_1_g23.t1; +sample AUGUSTUS CDS 194065 194461 0.19 + 0 ID=file_1_g23.t1.CDS1;Parent=file_1_g23.t1; +sample AUGUSTUS exon 194065 194461 . + . ID=file_1_g23.t1.exon1;Parent=file_1_g23.t1; +sample AUGUSTUS intron 194462 194517 0.12 + . ID=file_1_g23.t1.intron1;Parent=file_1_g23.t1; +sample AUGUSTUS CDS 194518 194669 0.21 + 2 ID=file_1_g23.t1.CDS2;Parent=file_1_g23.t1; +sample AUGUSTUS exon 194518 194669 . + . ID=file_1_g23.t1.exon2;Parent=file_1_g23.t1; +sample AUGUSTUS stop_codon 194667 194669 . + 0 ID=file_1_g23.t1.stop1;Parent=file_1_g23.t1; +sample AUGUSTUS stop_codon 14247 14249 . - 0 ID=file_1_g4.t1.stop1;Parent=file_1_g4.t1; +sample AUGUSTUS CDS 14247 14659 0.67 - 2 ID=file_1_g4.t1.CDS1;Parent=file_1_g4.t1; +sample AUGUSTUS exon 14247 14659 . - . ID=file_1_g4.t1.exon1;Parent=file_1_g4.t1; +sample AUGUSTUS intron 14660 14793 0.68 - . ID=file_1_g4.t1.intron1;Parent=file_1_g4.t1; +sample AUGUSTUS CDS 14794 14952 1 - 2 ID=file_1_g4.t1.CDS2;Parent=file_1_g4.t1; +sample AUGUSTUS exon 14794 14952 . - . ID=file_1_g4.t1.exon2;Parent=file_1_g4.t1; +sample AUGUSTUS intron 14953 15360 1 - . ID=file_1_g4.t1.intron2;Parent=file_1_g4.t1; +sample AUGUSTUS CDS 15361 17164 1 - 0 ID=file_1_g4.t1.CDS3;Parent=file_1_g4.t1; +sample AUGUSTUS exon 15361 17164 . - . ID=file_1_g4.t1.exon3;Parent=file_1_g4.t1; +sample AUGUSTUS intron 17165 17295 1 - . ID=file_1_g4.t1.intron3;Parent=file_1_g4.t1; +sample AUGUSTUS CDS 17296 18096 0.99 - 0 ID=file_1_g4.t1.CDS4;Parent=file_1_g4.t1; +sample AUGUSTUS exon 17296 18096 . - . ID=file_1_g4.t1.exon4;Parent=file_1_g4.t1; +sample AUGUSTUS intron 18097 18220 0.99 - . ID=file_1_g4.t1.intron4;Parent=file_1_g4.t1; +sample AUGUSTUS CDS 18221 18259 0.99 - 0 ID=file_1_g4.t1.CDS5;Parent=file_1_g4.t1; +sample AUGUSTUS exon 18221 18259 . - . ID=file_1_g4.t1.exon5;Parent=file_1_g4.t1; +sample AUGUSTUS intron 18260 18462 0.95 - . ID=file_1_g4.t1.intron5;Parent=file_1_g4.t1; +sample AUGUSTUS CDS 18463 19499 0.99 - 2 ID=file_1_g4.t1.CDS6;Parent=file_1_g4.t1; +sample AUGUSTUS exon 18463 19499 . - . ID=file_1_g4.t1.exon6;Parent=file_1_g4.t1; +sample AUGUSTUS intron 19500 19606 1 - . ID=file_1_g4.t1.intron6;Parent=file_1_g4.t1; +sample AUGUSTUS CDS 19607 21542 1 - 0 ID=file_1_g4.t1.CDS7;Parent=file_1_g4.t1; +sample AUGUSTUS exon 19607 21542 . - . ID=file_1_g4.t1.exon7;Parent=file_1_g4.t1; +sample AUGUSTUS start_codon 21540 21542 . - 0 ID=file_1_g4.t1.start1;Parent=file_1_g4.t1; +sample AUGUSTUS stop_codon 27589 27591 . - 0 ID=file_1_g6.t1.stop1;Parent=file_1_g6.t1; +sample AUGUSTUS CDS 27589 28143 0.2 - 0 ID=file_1_g6.t1.CDS1;Parent=file_1_g6.t1; +sample AUGUSTUS exon 27589 28143 . - . ID=file_1_g6.t1.exon1;Parent=file_1_g6.t1; +sample AUGUSTUS start_codon 28141 28143 . - 0 ID=file_1_g6.t1.start1;Parent=file_1_g6.t1; +sample AUGUSTUS stop_codon 183489 183491 . - 0 ID=file_1_g22.t1.stop1;Parent=file_1_g22.t1; +sample AUGUSTUS CDS 183489 183643 0.43 - 2 ID=file_1_g22.t1.CDS1;Parent=file_1_g22.t1; +sample AUGUSTUS exon 183489 183643 . - . ID=file_1_g22.t1.exon1;Parent=file_1_g22.t1; +sample AUGUSTUS intron 183644 183709 0.4 - . ID=file_1_g22.t1.intron1;Parent=file_1_g22.t1; +sample AUGUSTUS CDS 183710 183954 0.24 - 1 ID=file_1_g22.t1.CDS2;Parent=file_1_g22.t1; +sample AUGUSTUS exon 183710 183954 . - . ID=file_1_g22.t1.exon2;Parent=file_1_g22.t1; +sample AUGUSTUS intron 183955 186056 0.28 - . ID=file_1_g22.t1.intron2;Parent=file_1_g22.t1; +sample AUGUSTUS CDS 186057 186166 0.43 - 0 ID=file_1_g22.t1.CDS3;Parent=file_1_g22.t1; +sample AUGUSTUS exon 186057 186166 . - . ID=file_1_g22.t1.exon3;Parent=file_1_g22.t1; +sample AUGUSTUS start_codon 186164 186166 . - 0 ID=file_1_g22.t1.start1;Parent=file_1_g22.t1; +sample AUGUSTUS start_codon 2126 2128 . + 0 ID=file_1_g2.t1.start1;Parent=file_1_g2.t1; +sample AUGUSTUS CDS 2126 2199 1 + 0 ID=file_1_g2.t1.CDS1;Parent=file_1_g2.t1; +sample AUGUSTUS exon 2126 2199 . + . ID=file_1_g2.t1.exon1;Parent=file_1_g2.t1; +sample AUGUSTUS intron 2200 2257 1 + . ID=file_1_g2.t1.intron1;Parent=file_1_g2.t1; +sample AUGUSTUS CDS 2258 3224 0.49 + 1 ID=file_1_g2.t1.CDS2;Parent=file_1_g2.t1; +sample AUGUSTUS exon 2258 3224 . + . ID=file_1_g2.t1.exon2;Parent=file_1_g2.t1; +sample AUGUSTUS intron 3225 3283 0.29 + . ID=file_1_g2.t1.intron2;Parent=file_1_g2.t1; +sample AUGUSTUS CDS 3284 3512 0.16 + 0 ID=file_1_g2.t1.CDS3;Parent=file_1_g2.t1; +sample AUGUSTUS exon 3284 3512 . + . ID=file_1_g2.t1.exon3;Parent=file_1_g2.t1; +sample AUGUSTUS intron 3513 3807 0.22 + . ID=file_1_g2.t1.intron3;Parent=file_1_g2.t1; +sample AUGUSTUS CDS 3808 3863 0.54 + 2 ID=file_1_g2.t1.CDS4;Parent=file_1_g2.t1; +sample AUGUSTUS exon 3808 3863 . + . ID=file_1_g2.t1.exon4;Parent=file_1_g2.t1; +sample AUGUSTUS stop_codon 3861 3863 . + 0 ID=file_1_g2.t1.stop1;Parent=file_1_g2.t1; +sample AUGUSTUS start_codon 116548 116550 . + 0 ID=file_1_g17.t1.start1;Parent=file_1_g17.t1; +sample AUGUSTUS CDS 116548 119382 0.85 + 0 ID=file_1_g17.t1.CDS1;Parent=file_1_g17.t1; +sample AUGUSTUS exon 116548 119382 . + . ID=file_1_g17.t1.exon1;Parent=file_1_g17.t1; +sample AUGUSTUS stop_codon 119380 119382 . + 0 ID=file_1_g17.t1.stop1;Parent=file_1_g17.t1; +sample AUGUSTUS start_codon 159171 159173 . + 0 ID=file_1_g20.t1.start1;Parent=file_1_g20.t1; +sample AUGUSTUS CDS 159171 164495 0.95 + 0 ID=file_1_g20.t1.CDS1;Parent=file_1_g20.t1; +sample AUGUSTUS exon 159171 164495 . + . ID=file_1_g20.t1.exon1;Parent=file_1_g20.t1; +sample AUGUSTUS stop_codon 164493 164495 . + 0 ID=file_1_g20.t1.stop1;Parent=file_1_g20.t1; +sample AUGUSTUS stop_codon 73851 73853 . - 0 ID=file_1_g13.t1.stop1;Parent=file_1_g13.t1; +sample AUGUSTUS CDS 73851 74116 0.56 - 2 ID=file_1_g13.t1.CDS1;Parent=file_1_g13.t1; +sample AUGUSTUS exon 73851 74116 . - . ID=file_1_g13.t1.exon1;Parent=file_1_g13.t1; +sample AUGUSTUS intron 74117 79000 . - . ID=file_1_g13.t1.intron1;Parent=file_1_g13.t1; +sample AUGUSTUS CDS 79001 79010 0.01 - 0 ID=file_1_g13.t1.CDS2;Parent=file_1_g13.t1; +sample AUGUSTUS exon 79001 79010 . - . ID=file_1_g13.t1.exon2;Parent=file_1_g13.t1; +sample AUGUSTUS start_codon 79008 79010 . - 0 ID=file_1_g13.t1.start1;Parent=file_1_g13.t1; +sample4 AUGUSTUS start_codon 2126 2128 . + 0 ID=file_1_g27.t1.start1;Parent=file_1_g27.t1; +sample4 AUGUSTUS CDS 2126 2199 1 + 0 ID=file_1_g27.t1.CDS1;Parent=file_1_g27.t1; +sample4 AUGUSTUS exon 2126 2199 . + . ID=file_1_g27.t1.exon1;Parent=file_1_g27.t1; +sample4 AUGUSTUS intron 2200 2257 1 + . ID=file_1_g27.t1.intron1;Parent=file_1_g27.t1; +sample4 AUGUSTUS CDS 2258 3224 0.45 + 1 ID=file_1_g27.t1.CDS2;Parent=file_1_g27.t1; +sample4 AUGUSTUS exon 2258 3224 . + . ID=file_1_g27.t1.exon2;Parent=file_1_g27.t1; +sample4 AUGUSTUS intron 3225 3283 0.33 + . ID=file_1_g27.t1.intron2;Parent=file_1_g27.t1; +sample4 AUGUSTUS CDS 3284 3512 0.14 + 0 ID=file_1_g27.t1.CDS3;Parent=file_1_g27.t1; +sample4 AUGUSTUS exon 3284 3512 . + . ID=file_1_g27.t1.exon3;Parent=file_1_g27.t1; +sample4 AUGUSTUS intron 3513 3807 0.22 + . ID=file_1_g27.t1.intron3;Parent=file_1_g27.t1; +sample4 AUGUSTUS CDS 3808 3863 0.59 + 2 ID=file_1_g27.t1.CDS4;Parent=file_1_g27.t1; +sample4 AUGUSTUS exon 3808 3863 . + . ID=file_1_g27.t1.exon4;Parent=file_1_g27.t1; +sample4 AUGUSTUS stop_codon 3861 3863 . + 0 ID=file_1_g27.t1.stop1;Parent=file_1_g27.t1; +sample4 AUGUSTUS stop_codon 4248 4250 . - 0 ID=file_1_g28.t1.stop1;Parent=file_1_g28.t1; +sample4 AUGUSTUS CDS 4248 4738 0.42 - 2 ID=file_1_g28.t1.CDS1;Parent=file_1_g28.t1; +sample4 AUGUSTUS exon 4248 4738 . - . ID=file_1_g28.t1.exon1;Parent=file_1_g28.t1; +sample4 AUGUSTUS intron 4739 4929 0.42 - . ID=file_1_g28.t1.intron1;Parent=file_1_g28.t1; +sample4 AUGUSTUS CDS 4930 5539 0.37 - 0 ID=file_1_g28.t1.CDS2;Parent=file_1_g28.t1; +sample4 AUGUSTUS exon 4930 5539 . - . ID=file_1_g28.t1.exon2;Parent=file_1_g28.t1; +sample4 AUGUSTUS intron 5540 6038 0.29 - . ID=file_1_g28.t1.intron2;Parent=file_1_g28.t1; +sample4 AUGUSTUS CDS 6039 6494 0.47 - 0 ID=file_1_g28.t1.CDS3;Parent=file_1_g28.t1; +sample4 AUGUSTUS exon 6039 6494 . - . ID=file_1_g28.t1.exon3;Parent=file_1_g28.t1; +sample4 AUGUSTUS start_codon 6492 6494 . - 0 ID=file_1_g28.t1.start1;Parent=file_1_g28.t1; +sample AUGUSTUS stop_codon 22811 22813 . - 0 ID=file_1_g5.t1.stop1;Parent=file_1_g5.t1; +sample AUGUSTUS CDS 22811 24038 1 - 1 ID=file_1_g5.t1.CDS1;Parent=file_1_g5.t1; +sample AUGUSTUS exon 22811 24038 . - . ID=file_1_g5.t1.exon1;Parent=file_1_g5.t1; +sample AUGUSTUS intron 24039 26107 1 - . ID=file_1_g5.t1.intron1;Parent=file_1_g5.t1; +sample AUGUSTUS CDS 26108 27111 0.98 - 0 ID=file_1_g5.t1.CDS2;Parent=file_1_g5.t1; +sample AUGUSTUS exon 26108 27111 . - . ID=file_1_g5.t1.exon2;Parent=file_1_g5.t1; +sample AUGUSTUS start_codon 27109 27111 . - 0 ID=file_1_g5.t1.start1;Parent=file_1_g5.t1; +sample AUGUSTUS stop_codon 56484 56486 . - 0 ID=file_1_g11.t1.stop1;Parent=file_1_g11.t1; +sample AUGUSTUS CDS 56484 56821 0.37 - 2 ID=file_1_g11.t1.CDS1;Parent=file_1_g11.t1; +sample AUGUSTUS exon 56484 56821 . - . ID=file_1_g11.t1.exon1;Parent=file_1_g11.t1; +sample AUGUSTUS intron 56822 57445 0.37 - . ID=file_1_g11.t1.intron1;Parent=file_1_g11.t1; +sample AUGUSTUS CDS 57446 57566 0.07 - 0 ID=file_1_g11.t1.CDS2;Parent=file_1_g11.t1; +sample AUGUSTUS exon 57446 57566 . - . ID=file_1_g11.t1.exon2;Parent=file_1_g11.t1; +sample AUGUSTUS start_codon 57564 57566 . - 0 ID=file_1_g11.t1.start1;Parent=file_1_g11.t1; +sample AUGUSTUS stop_codon 1092 1094 . - 0 ID=file_1_g1.t1.stop1;Parent=file_1_g1.t1; +sample AUGUSTUS CDS 1092 1364 0.68 - 0 ID=file_1_g1.t1.CDS1;Parent=file_1_g1.t1; +sample AUGUSTUS exon 1092 1364 . - . ID=file_1_g1.t1.exon1;Parent=file_1_g1.t1; +sample AUGUSTUS start_codon 1362 1364 . - 0 ID=file_1_g1.t1.start1;Parent=file_1_g1.t1; +sample AUGUSTUS stop_codon 40166 40168 . - 0 ID=file_1_g8.t1.stop1;Parent=file_1_g8.t1; +sample AUGUSTUS CDS 40166 40531 0.99 - 0 ID=file_1_g8.t1.CDS1;Parent=file_1_g8.t1; +sample AUGUSTUS exon 40166 40531 . - . ID=file_1_g8.t1.exon1;Parent=file_1_g8.t1; +sample AUGUSTUS start_codon 40529 40531 . - 0 ID=file_1_g8.t1.start1;Parent=file_1_g8.t1; +sample AUGUSTUS start_codon 143824 143826 . + 0 ID=file_1_g19.t1.start1;Parent=file_1_g19.t1; +sample AUGUSTUS CDS 143824 143830 0.99 + 0 ID=file_1_g19.t1.CDS1;Parent=file_1_g19.t1; +sample AUGUSTUS exon 143824 143830 . + . ID=file_1_g19.t1.exon1;Parent=file_1_g19.t1; +sample AUGUSTUS intron 143831 144252 0.74 + . ID=file_1_g19.t1.intron1;Parent=file_1_g19.t1; +sample AUGUSTUS CDS 144253 144559 0.19 + 2 ID=file_1_g19.t1.CDS2;Parent=file_1_g19.t1; +sample AUGUSTUS exon 144253 144559 . + . ID=file_1_g19.t1.exon2;Parent=file_1_g19.t1; +sample AUGUSTUS intron 144560 145804 0.24 + . ID=file_1_g19.t1.intron2;Parent=file_1_g19.t1; +sample AUGUSTUS CDS 145805 146055 0.13 + 1 ID=file_1_g19.t1.CDS3;Parent=file_1_g19.t1; +sample AUGUSTUS exon 145805 146055 . + . ID=file_1_g19.t1.exon3;Parent=file_1_g19.t1; +sample AUGUSTUS intron 146056 149018 0.23 + . ID=file_1_g19.t1.intron3;Parent=file_1_g19.t1; +sample AUGUSTUS CDS 149019 149244 0.28 + 2 ID=file_1_g19.t1.CDS4;Parent=file_1_g19.t1; +sample AUGUSTUS exon 149019 149244 . + . ID=file_1_g19.t1.exon4;Parent=file_1_g19.t1; +sample AUGUSTUS intron 149245 149411 0.66 + . ID=file_1_g19.t1.intron4;Parent=file_1_g19.t1; +sample AUGUSTUS CDS 149412 149586 0.26 + 1 ID=file_1_g19.t1.CDS5;Parent=file_1_g19.t1; +sample AUGUSTUS exon 149412 149586 . + . ID=file_1_g19.t1.exon5;Parent=file_1_g19.t1; +sample AUGUSTUS intron 149587 149672 0.43 + . ID=file_1_g19.t1.intron5;Parent=file_1_g19.t1; +sample AUGUSTUS CDS 149673 149917 0.27 + 0 ID=file_1_g19.t1.CDS6;Parent=file_1_g19.t1; +sample AUGUSTUS exon 149673 149917 . + . ID=file_1_g19.t1.exon6;Parent=file_1_g19.t1; +sample AUGUSTUS intron 149918 152341 0.26 + . ID=file_1_g19.t1.intron6;Parent=file_1_g19.t1; +sample AUGUSTUS CDS 152342 152429 0.26 + 1 ID=file_1_g19.t1.CDS7;Parent=file_1_g19.t1; +sample AUGUSTUS exon 152342 152429 . + . ID=file_1_g19.t1.exon7;Parent=file_1_g19.t1; +sample AUGUSTUS intron 152430 152495 0.32 + . ID=file_1_g19.t1.intron7;Parent=file_1_g19.t1; +sample AUGUSTUS CDS 152496 152751 0.41 + 0 ID=file_1_g19.t1.CDS8;Parent=file_1_g19.t1; +sample AUGUSTUS exon 152496 152751 . + . ID=file_1_g19.t1.exon8;Parent=file_1_g19.t1; +sample AUGUSTUS intron 152752 153206 0.42 + . ID=file_1_g19.t1.intron8;Parent=file_1_g19.t1; +sample AUGUSTUS CDS 153207 159043 0.51 + 2 ID=file_1_g19.t1.CDS9;Parent=file_1_g19.t1; +sample AUGUSTUS exon 153207 159043 . + . ID=file_1_g19.t1.exon9;Parent=file_1_g19.t1; +sample AUGUSTUS stop_codon 159041 159043 . + 0 ID=file_1_g19.t1.stop1;Parent=file_1_g19.t1; +sample AUGUSTUS start_codon 115274 115276 . + 0 ID=file_1_g16.t1.start1;Parent=file_1_g16.t1; +sample AUGUSTUS CDS 115274 116488 0.87 + 0 ID=file_1_g16.t1.CDS1;Parent=file_1_g16.t1; +sample AUGUSTUS exon 115274 116488 . + . ID=file_1_g16.t1.exon1;Parent=file_1_g16.t1; +sample AUGUSTUS stop_codon 116486 116488 . + 0 ID=file_1_g16.t1.stop1;Parent=file_1_g16.t1; +sample AUGUSTUS stop_codon 209044 209046 . - 0 ID=file_1_g24.t1.stop1;Parent=file_1_g24.t1; +sample AUGUSTUS CDS 209044 210483 0.38 - 0 ID=file_1_g24.t1.CDS1;Parent=file_1_g24.t1; +sample AUGUSTUS exon 209044 210483 . - . ID=file_1_g24.t1.exon1;Parent=file_1_g24.t1; +sample AUGUSTUS start_codon 210481 210483 . - 0 ID=file_1_g24.t1.start1;Parent=file_1_g24.t1; +sample AUGUSTUS stop_codon 100542 100544 . - 0 ID=file_1_g15.t1.stop1;Parent=file_1_g15.t1; +sample AUGUSTUS CDS 100542 100756 0.3 - 2 ID=file_1_g15.t1.CDS1;Parent=file_1_g15.t1; +sample AUGUSTUS exon 100542 100756 . - . ID=file_1_g15.t1.exon1;Parent=file_1_g15.t1; +sample AUGUSTUS intron 100757 102520 0.32 - . ID=file_1_g15.t1.intron1;Parent=file_1_g15.t1; +sample AUGUSTUS CDS 102521 103133 0.26 - 0 ID=file_1_g15.t1.CDS2;Parent=file_1_g15.t1; +sample AUGUSTUS exon 102521 103133 . - . ID=file_1_g15.t1.exon2;Parent=file_1_g15.t1; +sample AUGUSTUS intron 103134 103264 0.25 - . ID=file_1_g15.t1.intron2;Parent=file_1_g15.t1; +sample AUGUSTUS CDS 103265 104819 0.09 - 1 ID=file_1_g15.t1.CDS3;Parent=file_1_g15.t1; +sample AUGUSTUS exon 103265 104819 . - . ID=file_1_g15.t1.exon3;Parent=file_1_g15.t1; +sample AUGUSTUS intron 104820 108228 0.15 - . ID=file_1_g15.t1.intron3;Parent=file_1_g15.t1; +sample AUGUSTUS CDS 108229 108299 0.42 - 0 ID=file_1_g15.t1.CDS4;Parent=file_1_g15.t1; +sample AUGUSTUS exon 108229 108299 . - . ID=file_1_g15.t1.exon4;Parent=file_1_g15.t1; +sample AUGUSTUS start_codon 108297 108299 . - 0 ID=file_1_g15.t1.start1;Parent=file_1_g15.t1; +sample AUGUSTUS stop_codon 214566 214568 . - 0 ID=file_1_g25.t1.stop1;Parent=file_1_g25.t1; +sample AUGUSTUS CDS 214566 214811 0.19 - 0 ID=file_1_g25.t1.CDS1;Parent=file_1_g25.t1; +sample AUGUSTUS exon 214566 214811 . - . ID=file_1_g25.t1.exon1;Parent=file_1_g25.t1; +sample AUGUSTUS start_codon 214809 214811 . - 0 ID=file_1_g25.t1.start1;Parent=file_1_g25.t1; +sample AUGUSTUS start_codon 58640 58642 . + 0 ID=file_1_g12.t1.start1;Parent=file_1_g12.t1; +sample AUGUSTUS CDS 58640 58677 0.01 + 0 ID=file_1_g12.t1.CDS1;Parent=file_1_g12.t1; +sample AUGUSTUS exon 58640 58677 . + . ID=file_1_g12.t1.exon1;Parent=file_1_g12.t1; +sample AUGUSTUS intron 58678 59091 0.01 + . ID=file_1_g12.t1.intron1;Parent=file_1_g12.t1; +sample AUGUSTUS CDS 59092 59204 0.01 + 1 ID=file_1_g12.t1.CDS2;Parent=file_1_g12.t1; +sample AUGUSTUS exon 59092 59204 . + . ID=file_1_g12.t1.exon2;Parent=file_1_g12.t1; +sample AUGUSTUS intron 59205 69536 0.01 + . ID=file_1_g12.t1.intron2;Parent=file_1_g12.t1; +sample AUGUSTUS CDS 69537 69745 0.01 + 2 ID=file_1_g12.t1.CDS3;Parent=file_1_g12.t1; +sample AUGUSTUS exon 69537 69745 . + . ID=file_1_g12.t1.exon3;Parent=file_1_g12.t1; +sample AUGUSTUS stop_codon 69743 69745 . + 0 ID=file_1_g12.t1.stop1;Parent=file_1_g12.t1; +sample AUGUSTUS stop_codon 45527 45529 . - 0 ID=file_1_g10.t1.stop1;Parent=file_1_g10.t1; +sample AUGUSTUS CDS 45527 46157 0.51 - 1 ID=file_1_g10.t1.CDS1;Parent=file_1_g10.t1; +sample AUGUSTUS exon 45527 46157 . - . ID=file_1_g10.t1.exon1;Parent=file_1_g10.t1; +sample AUGUSTUS intron 46158 46752 0.42 - . ID=file_1_g10.t1.intron1;Parent=file_1_g10.t1; +sample AUGUSTUS CDS 46753 47379 0.43 - 1 ID=file_1_g10.t1.CDS2;Parent=file_1_g10.t1; +sample AUGUSTUS exon 46753 47379 . - . ID=file_1_g10.t1.exon2;Parent=file_1_g10.t1; +sample AUGUSTUS intron 47380 49616 0.44 - . ID=file_1_g10.t1.intron2;Parent=file_1_g10.t1; +sample AUGUSTUS CDS 49617 49792 0.45 - 0 ID=file_1_g10.t1.CDS3;Parent=file_1_g10.t1; +sample AUGUSTUS exon 49617 49792 . - . ID=file_1_g10.t1.exon3;Parent=file_1_g10.t1; +sample AUGUSTUS start_codon 49790 49792 . - 0 ID=file_1_g10.t1.start1;Parent=file_1_g10.t1;