Mercurial > repos > genouest > braker3
view test-data/out_bam/braker.gtf @ 5:3452c806c478 draft
planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/braker commit 5bcf6a26284965f4fbf04be67ae7c186bb7e908f
| author | genouest |
|---|---|
| date | Mon, 12 Feb 2024 10:38:15 +0000 |
| parents | 3c0865d1172f |
| children |
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sample AUGUSTUS start_codon 79526 79528 . + 0 transcript_id "file_1_g14.t1"; gene_id "file_1_g14"; sample AUGUSTUS CDS 79526 80474 0.4 + 0 transcript_id "file_1_g14.t1"; gene_id "file_1_g14"; sample AUGUSTUS exon 79526 80474 . + . transcript_id "file_1_g14.t1"; gene_id "file_1_g14"; sample AUGUSTUS intron 80475 87860 0.49 + . transcript_id "file_1_g14.t1"; gene_id "file_1_g14"; sample AUGUSTUS CDS 87861 88125 0.39 + 2 transcript_id "file_1_g14.t1"; gene_id "file_1_g14"; sample AUGUSTUS exon 87861 88125 . + . transcript_id "file_1_g14.t1"; gene_id "file_1_g14"; sample AUGUSTUS intron 88126 92148 0.19 + . transcript_id "file_1_g14.t1"; gene_id "file_1_g14"; sample AUGUSTUS CDS 92149 92252 0.17 + 1 transcript_id "file_1_g14.t1"; gene_id "file_1_g14"; sample AUGUSTUS exon 92149 92252 . + . transcript_id "file_1_g14.t1"; gene_id "file_1_g14"; sample AUGUSTUS intron 92253 94562 0.19 + . transcript_id "file_1_g14.t1"; gene_id "file_1_g14"; sample AUGUSTUS CDS 94563 94732 0.96 + 2 transcript_id "file_1_g14.t1"; gene_id "file_1_g14"; sample AUGUSTUS exon 94563 94732 . + . transcript_id "file_1_g14.t1"; gene_id "file_1_g14"; sample AUGUSTUS intron 94733 94872 0.91 + . transcript_id "file_1_g14.t1"; gene_id "file_1_g14"; sample AUGUSTUS CDS 94873 95333 0.79 + 0 transcript_id "file_1_g14.t1"; gene_id "file_1_g14"; sample AUGUSTUS exon 94873 95333 . + . transcript_id "file_1_g14.t1"; gene_id "file_1_g14"; sample AUGUSTUS intron 95334 95584 0.51 + . transcript_id "file_1_g14.t1"; gene_id "file_1_g14"; sample AUGUSTUS CDS 95585 95762 0.35 + 1 transcript_id "file_1_g14.t1"; gene_id "file_1_g14"; sample AUGUSTUS gene 79526 95762 0.01 + . g14 sample AUGUSTUS transcript 79526 95762 0.01 + . g14.t1 sample AUGUSTUS exon 95585 95762 . + . transcript_id "file_1_g14.t1"; gene_id "file_1_g14"; sample AUGUSTUS stop_codon 95760 95762 . + 0 transcript_id "file_1_g14.t1"; gene_id "file_1_g14"; sample4 AUGUSTUS stop_codon 4248 4250 . - 0 transcript_id "file_1_g28.t1"; gene_id "file_1_g28"; sample4 AUGUSTUS CDS 4248 4738 0.42 - 2 transcript_id "file_1_g28.t1"; gene_id "file_1_g28"; sample4 AUGUSTUS exon 4248 4738 . - . transcript_id "file_1_g28.t1"; gene_id "file_1_g28"; sample4 AUGUSTUS intron 4739 4929 0.42 - . transcript_id "file_1_g28.t1"; gene_id "file_1_g28"; sample4 AUGUSTUS CDS 4930 5539 0.37 - 0 transcript_id "file_1_g28.t1"; gene_id "file_1_g28"; sample4 AUGUSTUS exon 4930 5539 . - . transcript_id "file_1_g28.t1"; gene_id "file_1_g28"; sample4 AUGUSTUS intron 5540 6038 0.29 - . transcript_id "file_1_g28.t1"; gene_id "file_1_g28"; sample4 AUGUSTUS CDS 6039 6494 0.47 - 0 transcript_id "file_1_g28.t1"; gene_id "file_1_g28"; sample4 AUGUSTUS gene 4248 6494 0.12 - . g28 sample4 AUGUSTUS transcript 4248 6494 0.12 - . g28.t1 sample4 AUGUSTUS exon 6039 6494 . - . transcript_id "file_1_g28.t1"; gene_id "file_1_g28"; sample4 AUGUSTUS start_codon 6492 6494 . - 0 transcript_id "file_1_g28.t1"; gene_id "file_1_g28"; sample AUGUSTUS stop_codon 209044 209046 . - 0 transcript_id "file_1_g24.t1"; gene_id "file_1_g24"; sample AUGUSTUS CDS 209044 210483 0.38 - 0 transcript_id "file_1_g24.t1"; gene_id "file_1_g24"; sample AUGUSTUS exon 209044 210483 . - . transcript_id "file_1_g24.t1"; gene_id "file_1_g24"; sample AUGUSTUS start_codon 210481 210483 . - 0 transcript_id "file_1_g24.t1"; gene_id "file_1_g24"; sample AUGUSTUS gene 209044 210483 0.38 - . g24 sample AUGUSTUS transcript 209044 210483 0.38 - . g24.t1 sample AUGUSTUS start_codon 2126 2128 . + 0 transcript_id "file_1_g2.t1"; gene_id "file_1_g2"; sample AUGUSTUS CDS 2126 2199 1 + 0 transcript_id "file_1_g2.t1"; gene_id "file_1_g2"; sample AUGUSTUS exon 2126 2199 . + . transcript_id "file_1_g2.t1"; gene_id "file_1_g2"; sample AUGUSTUS intron 2200 2257 1 + . transcript_id "file_1_g2.t1"; gene_id "file_1_g2"; sample AUGUSTUS CDS 2258 3224 0.49 + 1 transcript_id "file_1_g2.t1"; gene_id "file_1_g2"; sample AUGUSTUS exon 2258 3224 . + . transcript_id "file_1_g2.t1"; gene_id "file_1_g2"; sample AUGUSTUS intron 3225 3283 0.29 + . transcript_id "file_1_g2.t1"; gene_id "file_1_g2"; sample AUGUSTUS CDS 3284 3512 0.16 + 0 transcript_id "file_1_g2.t1"; gene_id "file_1_g2"; sample AUGUSTUS exon 3284 3512 . + . transcript_id "file_1_g2.t1"; gene_id "file_1_g2"; sample AUGUSTUS intron 3513 3807 0.22 + . transcript_id "file_1_g2.t1"; gene_id "file_1_g2"; sample AUGUSTUS CDS 3808 3863 0.54 + 2 transcript_id "file_1_g2.t1"; gene_id "file_1_g2"; sample AUGUSTUS gene 2126 3863 0.1 + . g2 sample AUGUSTUS transcript 2126 3863 0.1 + . g2.t1 sample AUGUSTUS exon 3808 3863 . + . transcript_id "file_1_g2.t1"; gene_id "file_1_g2"; sample AUGUSTUS stop_codon 3861 3863 . + 0 transcript_id "file_1_g2.t1"; gene_id "file_1_g2"; sample GeneMark.hmm3 stop_codon 15344 15346 . - 0 gene_id "file_2_4_g"; transcript_id "file_2_4_t"; sample GeneMark.hmm3 CDS 15344 17164 . - 0 gene_id "file_2_4_g"; transcript_id "file_2_4_t"; cds_type "file_2_Terminal"; count "file_2_5_5"; sample GeneMark.hmm3 intron 17165 17295 . - 0 gene_id "file_2_4_g"; transcript_id "file_2_4_t"; sample GeneMark.hmm3 CDS 17296 18096 . - 0 gene_id "file_2_4_g"; transcript_id "file_2_4_t"; cds_type "file_2_Internal"; count "file_2_4_5"; sample GeneMark.hmm3 intron 18097 18220 . - 0 gene_id "file_2_4_g"; transcript_id "file_2_4_t"; sample GeneMark.hmm3 CDS 18221 18259 . - 0 gene_id "file_2_4_g"; transcript_id "file_2_4_t"; cds_type "file_2_Internal"; count "file_2_3_5"; sample GeneMark.hmm3 intron 18260 18462 . - 0 gene_id "file_2_4_g"; transcript_id "file_2_4_t"; sample GeneMark.hmm3 CDS 18463 19499 . - 2 gene_id "file_2_4_g"; transcript_id "file_2_4_t"; cds_type "file_2_Internal"; count "file_2_2_5"; sample GeneMark.hmm3 intron 19500 19606 . - 1 gene_id "file_2_4_g"; transcript_id "file_2_4_t"; sample GeneMark.hmm3 gene 15344 21542 . - . gene_id "file_2_4_g"; transcript_id "file_2_4_t"; sample GeneMark.hmm3 mRNA 15344 21542 . - . gene_id "file_2_4_g"; transcript_id "file_2_4_t"; sample GeneMark.hmm3 CDS 19607 21542 . - 0 gene_id "file_2_4_g"; transcript_id "file_2_4_t"; cds_type "file_2_Initial"; count "file_2_1_5"; sample GeneMark.hmm3 start_codon 21540 21542 . - 0 gene_id "file_2_4_g"; transcript_id "file_2_4_t"; sample AUGUSTUS start_codon 119778 119780 . + 0 transcript_id "file_1_g18.t1"; gene_id "file_1_g18"; sample AUGUSTUS CDS 119778 120378 1 + 0 transcript_id "file_1_g18.t1"; gene_id "file_1_g18"; sample AUGUSTUS exon 119778 120378 . + . transcript_id "file_1_g18.t1"; gene_id "file_1_g18"; sample AUGUSTUS intron 120379 123327 0.98 + . transcript_id "file_1_g18.t1"; gene_id "file_1_g18"; sample AUGUSTUS CDS 123328 123512 0.99 + 2 transcript_id "file_1_g18.t1"; gene_id "file_1_g18"; sample AUGUSTUS exon 123328 123512 . + . transcript_id "file_1_g18.t1"; gene_id "file_1_g18"; sample AUGUSTUS intron 123513 133208 0.5 + . transcript_id "file_1_g18.t1"; gene_id "file_1_g18"; sample AUGUSTUS CDS 133209 134539 1 + 0 transcript_id "file_1_g18.t1"; gene_id "file_1_g18"; sample AUGUSTUS exon 133209 134539 . + . transcript_id "file_1_g18.t1"; gene_id "file_1_g18"; sample AUGUSTUS intron 134540 134667 1 + . transcript_id "file_1_g18.t1"; gene_id "file_1_g18"; sample AUGUSTUS CDS 134668 135510 1 + 1 transcript_id "file_1_g18.t1"; gene_id "file_1_g18"; sample AUGUSTUS exon 134668 135510 . + . transcript_id "file_1_g18.t1"; gene_id "file_1_g18"; sample AUGUSTUS intron 135511 135568 1 + . transcript_id "file_1_g18.t1"; gene_id "file_1_g18"; sample AUGUSTUS CDS 135569 136346 0.99 + 1 transcript_id "file_1_g18.t1"; gene_id "file_1_g18"; sample AUGUSTUS gene 119778 136346 0.49 + . g18 sample AUGUSTUS transcript 119778 136346 0.49 + . g18.t1 sample AUGUSTUS exon 135569 136346 . + . transcript_id "file_1_g18.t1"; gene_id "file_1_g18"; sample AUGUSTUS stop_codon 136344 136346 . + 0 transcript_id "file_1_g18.t1"; gene_id "file_1_g18"; sample AUGUSTUS stop_codon 183489 183491 . - 0 transcript_id "file_1_g22.t1"; gene_id "file_1_g22"; sample AUGUSTUS CDS 183489 183643 0.43 - 2 transcript_id "file_1_g22.t1"; gene_id "file_1_g22"; sample AUGUSTUS exon 183489 183643 . - . transcript_id "file_1_g22.t1"; gene_id "file_1_g22"; sample AUGUSTUS intron 183644 183709 0.4 - . transcript_id "file_1_g22.t1"; gene_id "file_1_g22"; sample AUGUSTUS CDS 183710 183954 0.24 - 1 transcript_id "file_1_g22.t1"; gene_id "file_1_g22"; sample AUGUSTUS exon 183710 183954 . - . transcript_id "file_1_g22.t1"; gene_id "file_1_g22"; sample AUGUSTUS intron 183955 186056 0.28 - . transcript_id "file_1_g22.t1"; gene_id "file_1_g22"; sample AUGUSTUS CDS 186057 186166 0.43 - 0 transcript_id "file_1_g22.t1"; gene_id "file_1_g22"; sample AUGUSTUS gene 183489 186166 0.22 - . g22 sample AUGUSTUS transcript 183489 186166 0.22 - . g22.t1 sample AUGUSTUS exon 186057 186166 . - . transcript_id "file_1_g22.t1"; gene_id "file_1_g22"; sample AUGUSTUS start_codon 186164 186166 . - 0 transcript_id "file_1_g22.t1"; gene_id "file_1_g22"; sample4 GeneMark.hmm3 stop_codon 5997 5999 . - 0 gene_id "file_2_23_g"; transcript_id "file_2_23_t"; sample4 GeneMark.hmm3 CDS 5997 6450 . - 1 gene_id "file_2_23_g"; transcript_id "file_2_23_t"; cds_type "file_2_Terminal"; count "file_2_1_1"; sample4 GeneMark.hmm3 gene 5997 6450 . - . gene_id "file_2_23_g"; transcript_id "file_2_23_t"; sample4 GeneMark.hmm3 mRNA 5997 6450 . - . gene_id "file_2_23_g"; transcript_id "file_2_23_t"; sample GeneMark.hmm3 stop_codon 14247 14249 . - 0 gene_id "file_2_3_g"; transcript_id "file_2_3_t"; sample GeneMark.hmm3 CDS 14247 14672 . - 0 gene_id "file_2_3_g"; transcript_id "file_2_3_t"; cds_type "file_2_Single"; count "file_2_1_1"; sample GeneMark.hmm3 gene 14247 14672 . - . gene_id "file_2_3_g"; transcript_id "file_2_3_t"; sample GeneMark.hmm3 mRNA 14247 14672 . - . gene_id "file_2_3_g"; transcript_id "file_2_3_t"; sample GeneMark.hmm3 start_codon 14670 14672 . - 0 gene_id "file_2_3_g"; transcript_id "file_2_3_t"; sample GeneMark.hmm3 start_codon 94831 94833 . + 0 gene_id "file_2_12_g"; transcript_id "file_2_12_t"; sample GeneMark.hmm3 CDS 94831 95333 . + 0 gene_id "file_2_12_g"; transcript_id "file_2_12_t"; cds_type "file_2_Initial"; count "file_2_1_2"; sample GeneMark.hmm3 intron 95334 95386 . + 2 gene_id "file_2_12_g"; transcript_id "file_2_12_t"; sample GeneMark.hmm3 gene 94831 95762 . + . gene_id "file_2_12_g"; transcript_id "file_2_12_t"; sample GeneMark.hmm3 mRNA 94831 95762 . + . gene_id "file_2_12_g"; transcript_id "file_2_12_t"; sample GeneMark.hmm3 CDS 95387 95762 . + 1 gene_id "file_2_12_g"; transcript_id "file_2_12_t"; cds_type "file_2_Terminal"; count "file_2_2_2"; sample GeneMark.hmm3 stop_codon 95760 95762 . + 0 gene_id "file_2_12_g"; transcript_id "file_2_12_t"; sample4 GeneMark.hmm3 CDS 2258 3224 . + 1 gene_id "file_2_22_g"; transcript_id "file_2_22_t"; cds_type "file_2_Internal"; count "file_2_1_3"; sample4 GeneMark.hmm3 intron 3225 3283 . + 0 gene_id "file_2_22_g"; transcript_id "file_2_22_t"; sample4 GeneMark.hmm3 CDS 3284 3755 . + 0 gene_id "file_2_22_g"; transcript_id "file_2_22_t"; cds_type "file_2_Internal"; count "file_2_2_3"; sample4 GeneMark.hmm3 intron 3756 4934 . + 1 gene_id "file_2_22_g"; transcript_id "file_2_22_t"; sample4 GeneMark.hmm3 gene 2258 5707 . + . gene_id "file_2_22_g"; transcript_id "file_2_22_t"; sample4 GeneMark.hmm3 mRNA 2258 5707 . + . gene_id "file_2_22_g"; transcript_id "file_2_22_t"; sample4 GeneMark.hmm3 CDS 4935 5707 . + 2 gene_id "file_2_22_g"; transcript_id "file_2_22_t"; cds_type "file_2_Terminal"; count "file_2_3_3"; sample4 GeneMark.hmm3 stop_codon 5705 5707 . + 0 gene_id "file_2_22_g"; transcript_id "file_2_22_t"; sample GeneMark.hmm3 stop_codon 183489 183491 . - 0 gene_id "file_2_19_g"; transcript_id "file_2_19_t"; sample GeneMark.hmm3 CDS 183489 183658 . - 2 gene_id "file_2_19_g"; transcript_id "file_2_19_t"; cds_type "file_2_Terminal"; count "file_2_3_3"; sample GeneMark.hmm3 intron 183659 183709 . - 1 gene_id "file_2_19_g"; transcript_id "file_2_19_t"; sample GeneMark.hmm3 CDS 183710 183924 . - 1 gene_id "file_2_19_g"; transcript_id "file_2_19_t"; cds_type "file_2_Internal"; count "file_2_2_3"; sample GeneMark.hmm3 intron 183925 186056 . - 2 gene_id "file_2_19_g"; transcript_id "file_2_19_t"; sample GeneMark.hmm3 gene 183489 186166 . - . gene_id "file_2_19_g"; transcript_id "file_2_19_t"; sample GeneMark.hmm3 mRNA 183489 186166 . - . gene_id "file_2_19_g"; transcript_id "file_2_19_t"; sample GeneMark.hmm3 CDS 186057 186166 . - 0 gene_id "file_2_19_g"; transcript_id "file_2_19_t"; cds_type "file_2_Initial"; count "file_2_1_3"; sample GeneMark.hmm3 start_codon 186164 186166 . - 0 gene_id "file_2_19_g"; transcript_id "file_2_19_t"; sample GeneMark.hmm3 stop_codon 5997 5999 . - 0 gene_id "file_2_2_g"; transcript_id "file_2_2_t"; sample GeneMark.hmm3 CDS 5997 6450 . - 1 gene_id "file_2_2_g"; transcript_id "file_2_2_t"; cds_type "file_2_Terminal"; count "file_2_5_5"; sample GeneMark.hmm3 intron 6451 7715 . - 2 gene_id "file_2_2_g"; transcript_id "file_2_2_t"; sample GeneMark.hmm3 CDS 7716 8385 . - 2 gene_id "file_2_2_g"; transcript_id "file_2_2_t"; cds_type "file_2_Internal"; count "file_2_4_5"; sample GeneMark.hmm3 intron 8386 8706 . - 1 gene_id "file_2_2_g"; transcript_id "file_2_2_t"; sample GeneMark.hmm3 CDS 8707 10499 . - 1 gene_id "file_2_2_g"; transcript_id "file_2_2_t"; cds_type "file_2_Internal"; count "file_2_3_5"; sample GeneMark.hmm3 intron 10500 10642 . - 2 gene_id "file_2_2_g"; transcript_id "file_2_2_t"; sample GeneMark.hmm3 CDS 10643 10794 . - 0 gene_id "file_2_2_g"; transcript_id "file_2_2_t"; cds_type "file_2_Internal"; count "file_2_2_5"; sample GeneMark.hmm3 intron 10795 10816 . - 0 gene_id "file_2_2_g"; transcript_id "file_2_2_t"; sample GeneMark.hmm3 gene 5997 11104 . - . gene_id "file_2_2_g"; transcript_id "file_2_2_t"; sample GeneMark.hmm3 mRNA 5997 11104 . - . gene_id "file_2_2_g"; transcript_id "file_2_2_t"; sample GeneMark.hmm3 CDS 10817 11104 . - 0 gene_id "file_2_2_g"; transcript_id "file_2_2_t"; cds_type "file_2_Initial"; count "file_2_1_5"; sample GeneMark.hmm3 start_codon 11102 11104 . - 0 gene_id "file_2_2_g"; transcript_id "file_2_2_t"; sample AUGUSTUS stop_codon 4248 4250 . - 0 transcript_id "file_1_g3.t1"; gene_id "file_1_g3"; sample AUGUSTUS CDS 4248 4738 0.48 - 2 transcript_id "file_1_g3.t1"; gene_id "file_1_g3"; sample AUGUSTUS exon 4248 4738 . - . transcript_id "file_1_g3.t1"; gene_id "file_1_g3"; sample AUGUSTUS intron 4739 4929 0.48 - . transcript_id "file_1_g3.t1"; gene_id "file_1_g3"; sample AUGUSTUS CDS 4930 5539 0.45 - 0 transcript_id "file_1_g3.t1"; gene_id "file_1_g3"; sample AUGUSTUS exon 4930 5539 . - . transcript_id "file_1_g3.t1"; gene_id "file_1_g3"; sample AUGUSTUS intron 5540 6038 0.26 - . transcript_id "file_1_g3.t1"; gene_id "file_1_g3"; sample AUGUSTUS CDS 6039 6450 0.42 - 1 transcript_id "file_1_g3.t1"; gene_id "file_1_g3"; sample AUGUSTUS exon 6039 6450 . - . transcript_id "file_1_g3.t1"; gene_id "file_1_g3"; sample AUGUSTUS intron 6451 7715 0.85 - . transcript_id "file_1_g3.t1"; gene_id "file_1_g3"; sample AUGUSTUS CDS 7716 8362 0.49 - 0 transcript_id "file_1_g3.t1"; gene_id "file_1_g3"; sample AUGUSTUS exon 7716 8362 . - . transcript_id "file_1_g3.t1"; gene_id "file_1_g3"; sample AUGUSTUS intron 8363 8725 0.31 - . transcript_id "file_1_g3.t1"; gene_id "file_1_g3"; sample AUGUSTUS CDS 8726 10495 0.23 - 0 transcript_id "file_1_g3.t1"; gene_id "file_1_g3"; sample AUGUSTUS exon 8726 10495 . - . transcript_id "file_1_g3.t1"; gene_id "file_1_g3"; sample AUGUSTUS intron 10496 10662 0.22 - . transcript_id "file_1_g3.t1"; gene_id "file_1_g3"; sample AUGUSTUS CDS 10663 10794 0.45 - 0 transcript_id "file_1_g3.t1"; gene_id "file_1_g3"; sample AUGUSTUS exon 10663 10794 . - . transcript_id "file_1_g3.t1"; gene_id "file_1_g3"; sample AUGUSTUS intron 10795 10852 0.95 - . transcript_id "file_1_g3.t1"; gene_id "file_1_g3"; sample AUGUSTUS CDS 10853 11104 0.72 - 0 transcript_id "file_1_g3.t1"; gene_id "file_1_g3"; sample AUGUSTUS gene 4248 11104 0.01 - . g3 sample AUGUSTUS transcript 4248 11104 0.01 - . g3.t1 sample AUGUSTUS exon 10853 11104 . - . transcript_id "file_1_g3.t1"; gene_id "file_1_g3"; sample AUGUSTUS start_codon 11102 11104 . - 0 transcript_id "file_1_g3.t1"; gene_id "file_1_g3"; sample AUGUSTUS start_codon 194065 194067 . + 0 transcript_id "file_1_g23.t1"; gene_id "file_1_g23"; sample AUGUSTUS CDS 194065 194461 0.19 + 0 transcript_id "file_1_g23.t1"; gene_id "file_1_g23"; sample AUGUSTUS exon 194065 194461 . + . transcript_id "file_1_g23.t1"; gene_id "file_1_g23"; sample AUGUSTUS intron 194462 194517 0.12 + . transcript_id "file_1_g23.t1"; gene_id "file_1_g23"; sample AUGUSTUS CDS 194518 194669 0.21 + 2 transcript_id "file_1_g23.t1"; gene_id "file_1_g23"; sample AUGUSTUS gene 194065 194669 0.06 + . g23 sample AUGUSTUS transcript 194065 194669 0.06 + . g23.t1 sample AUGUSTUS exon 194518 194669 . + . transcript_id "file_1_g23.t1"; gene_id "file_1_g23"; sample AUGUSTUS stop_codon 194667 194669 . + 0 transcript_id "file_1_g23.t1"; gene_id "file_1_g23"; sample AUGUSTUS start_codon 116548 116550 . + 0 transcript_id "file_1_g17.t1"; gene_id "file_1_g17"; sample AUGUSTUS CDS 116548 119382 0.85 + 0 transcript_id "file_1_g17.t1"; gene_id "file_1_g17"; sample AUGUSTUS exon 116548 119382 . + . transcript_id "file_1_g17.t1"; gene_id "file_1_g17"; sample AUGUSTUS stop_codon 119380 119382 . + 0 transcript_id "file_1_g17.t1"; gene_id "file_1_g17"; sample AUGUSTUS gene 116548 119382 0.85 + . g17 sample AUGUSTUS transcript 116548 119382 0.85 + . g17.t1 sample AUGUSTUS start_codon 143824 143826 . + 0 transcript_id "file_1_g19.t1"; gene_id "file_1_g19"; sample AUGUSTUS CDS 143824 143830 0.99 + 0 transcript_id "file_1_g19.t1"; gene_id "file_1_g19"; sample AUGUSTUS exon 143824 143830 . + . transcript_id "file_1_g19.t1"; gene_id "file_1_g19"; sample AUGUSTUS intron 143831 144252 0.74 + . transcript_id "file_1_g19.t1"; gene_id "file_1_g19"; sample AUGUSTUS CDS 144253 144559 0.19 + 2 transcript_id "file_1_g19.t1"; gene_id "file_1_g19"; sample AUGUSTUS exon 144253 144559 . + . transcript_id "file_1_g19.t1"; gene_id "file_1_g19"; sample AUGUSTUS intron 144560 145804 0.24 + . transcript_id "file_1_g19.t1"; gene_id "file_1_g19"; sample AUGUSTUS CDS 145805 146055 0.13 + 1 transcript_id "file_1_g19.t1"; gene_id "file_1_g19"; sample AUGUSTUS exon 145805 146055 . + . transcript_id "file_1_g19.t1"; gene_id "file_1_g19"; sample AUGUSTUS intron 146056 149018 0.23 + . transcript_id "file_1_g19.t1"; gene_id "file_1_g19"; sample AUGUSTUS CDS 149019 149244 0.28 + 2 transcript_id "file_1_g19.t1"; gene_id "file_1_g19"; sample AUGUSTUS exon 149019 149244 . + . transcript_id "file_1_g19.t1"; gene_id "file_1_g19"; sample AUGUSTUS intron 149245 149411 0.66 + . transcript_id "file_1_g19.t1"; gene_id "file_1_g19"; sample AUGUSTUS CDS 149412 149586 0.26 + 1 transcript_id "file_1_g19.t1"; gene_id "file_1_g19"; sample AUGUSTUS exon 149412 149586 . + . transcript_id "file_1_g19.t1"; gene_id "file_1_g19"; sample AUGUSTUS intron 149587 149672 0.43 + . transcript_id "file_1_g19.t1"; gene_id "file_1_g19"; sample AUGUSTUS CDS 149673 149917 0.27 + 0 transcript_id "file_1_g19.t1"; gene_id "file_1_g19"; sample AUGUSTUS exon 149673 149917 . + . transcript_id "file_1_g19.t1"; gene_id "file_1_g19"; sample AUGUSTUS intron 149918 152341 0.26 + . transcript_id "file_1_g19.t1"; gene_id "file_1_g19"; sample AUGUSTUS CDS 152342 152429 0.26 + 1 transcript_id "file_1_g19.t1"; gene_id "file_1_g19"; sample AUGUSTUS exon 152342 152429 . + . transcript_id "file_1_g19.t1"; gene_id "file_1_g19"; sample AUGUSTUS intron 152430 152495 0.32 + . transcript_id "file_1_g19.t1"; gene_id "file_1_g19"; sample AUGUSTUS CDS 152496 152751 0.41 + 0 transcript_id "file_1_g19.t1"; gene_id "file_1_g19"; sample AUGUSTUS exon 152496 152751 . + . transcript_id "file_1_g19.t1"; gene_id "file_1_g19"; sample AUGUSTUS intron 152752 153206 0.42 + . transcript_id "file_1_g19.t1"; gene_id "file_1_g19"; sample AUGUSTUS CDS 153207 159043 0.51 + 2 transcript_id "file_1_g19.t1"; gene_id "file_1_g19"; sample AUGUSTUS gene 143824 159043 0.02 + . g19 sample AUGUSTUS transcript 143824 159043 0.02 + . g19.t1 sample AUGUSTUS exon 153207 159043 . + . transcript_id "file_1_g19.t1"; gene_id "file_1_g19"; sample AUGUSTUS stop_codon 159041 159043 . + 0 transcript_id "file_1_g19.t1"; gene_id "file_1_g19"; sample AUGUSTUS start_codon 58640 58642 . + 0 transcript_id "file_1_g12.t1"; gene_id "file_1_g12"; sample AUGUSTUS CDS 58640 58677 0.01 + 0 transcript_id "file_1_g12.t1"; gene_id "file_1_g12"; sample AUGUSTUS exon 58640 58677 . + . transcript_id "file_1_g12.t1"; gene_id "file_1_g12"; sample AUGUSTUS intron 58678 59091 0.01 + . transcript_id "file_1_g12.t1"; gene_id "file_1_g12"; sample AUGUSTUS CDS 59092 59204 0.01 + 1 transcript_id "file_1_g12.t1"; gene_id "file_1_g12"; sample AUGUSTUS exon 59092 59204 . + . transcript_id "file_1_g12.t1"; gene_id "file_1_g12"; sample AUGUSTUS intron 59205 69536 0.01 + . transcript_id "file_1_g12.t1"; gene_id "file_1_g12"; sample AUGUSTUS CDS 69537 69745 0.01 + 2 transcript_id "file_1_g12.t1"; gene_id "file_1_g12"; sample AUGUSTUS gene 58640 69745 0 + . g12 sample AUGUSTUS transcript 58640 69745 . + . g12.t1 sample AUGUSTUS exon 69537 69745 . + . transcript_id "file_1_g12.t1"; gene_id "file_1_g12"; sample AUGUSTUS stop_codon 69743 69745 . + 0 transcript_id "file_1_g12.t1"; gene_id "file_1_g12"; sample AUGUSTUS stop_codon 22811 22813 . - 0 transcript_id "file_1_g5.t1"; gene_id "file_1_g5"; sample AUGUSTUS CDS 22811 24038 1 - 1 transcript_id "file_1_g5.t1"; gene_id "file_1_g5"; sample AUGUSTUS exon 22811 24038 . - . transcript_id "file_1_g5.t1"; gene_id "file_1_g5"; sample AUGUSTUS intron 24039 26107 1 - . transcript_id "file_1_g5.t1"; gene_id "file_1_g5"; sample AUGUSTUS CDS 26108 27111 0.98 - 0 transcript_id "file_1_g5.t1"; gene_id "file_1_g5"; sample AUGUSTUS gene 22811 27111 0.98 - . g5 sample AUGUSTUS transcript 22811 27111 0.98 - . g5.t1 sample AUGUSTUS exon 26108 27111 . - . transcript_id "file_1_g5.t1"; gene_id "file_1_g5"; sample AUGUSTUS start_codon 27109 27111 . - 0 transcript_id "file_1_g5.t1"; gene_id "file_1_g5"; sample AUGUSTUS stop_codon 214566 214568 . - 0 transcript_id "file_1_g25.t1"; gene_id "file_1_g25"; sample AUGUSTUS CDS 214566 214811 0.19 - 0 transcript_id "file_1_g25.t1"; gene_id "file_1_g25"; sample AUGUSTUS exon 214566 214811 . - . transcript_id "file_1_g25.t1"; gene_id "file_1_g25"; sample AUGUSTUS start_codon 214809 214811 . - 0 transcript_id "file_1_g25.t1"; gene_id "file_1_g25"; sample AUGUSTUS gene 214566 214811 0.19 - . g25 sample AUGUSTUS transcript 214566 214811 0.19 - . g25.t1 sample AUGUSTUS stop_codon 45527 45529 . - 0 transcript_id "file_1_g10.t1"; gene_id "file_1_g10"; sample AUGUSTUS CDS 45527 46157 0.51 - 1 transcript_id "file_1_g10.t1"; gene_id "file_1_g10"; sample AUGUSTUS exon 45527 46157 . - . transcript_id "file_1_g10.t1"; gene_id "file_1_g10"; sample AUGUSTUS intron 46158 46752 0.42 - . transcript_id "file_1_g10.t1"; gene_id "file_1_g10"; sample AUGUSTUS CDS 46753 47379 0.43 - 1 transcript_id "file_1_g10.t1"; gene_id "file_1_g10"; sample AUGUSTUS exon 46753 47379 . - . transcript_id "file_1_g10.t1"; gene_id "file_1_g10"; sample AUGUSTUS intron 47380 49616 0.44 - . transcript_id "file_1_g10.t1"; gene_id "file_1_g10"; sample AUGUSTUS CDS 49617 49792 0.45 - 0 transcript_id "file_1_g10.t1"; gene_id "file_1_g10"; sample AUGUSTUS gene 45527 49792 0.15 - . g10 sample AUGUSTUS transcript 45527 49792 0.15 - . g10.t1 sample AUGUSTUS exon 49617 49792 . - . transcript_id "file_1_g10.t1"; gene_id "file_1_g10"; sample AUGUSTUS start_codon 49790 49792 . - 0 transcript_id "file_1_g10.t1"; gene_id "file_1_g10"; sample AUGUSTUS start_codon 159171 159173 . + 0 transcript_id "file_1_g20.t1"; gene_id "file_1_g20"; sample AUGUSTUS CDS 159171 164495 0.95 + 0 transcript_id "file_1_g20.t1"; gene_id "file_1_g20"; sample AUGUSTUS exon 159171 164495 . + . transcript_id "file_1_g20.t1"; gene_id "file_1_g20"; sample AUGUSTUS stop_codon 164493 164495 . + 0 transcript_id "file_1_g20.t1"; gene_id "file_1_g20"; sample AUGUSTUS gene 159171 164495 0.95 + . g20 sample AUGUSTUS transcript 159171 164495 0.95 + . g20.t1 sample AUGUSTUS stop_codon 1092 1094 . - 0 transcript_id "file_1_g1.t1"; gene_id "file_1_g1"; sample AUGUSTUS CDS 1092 1364 0.68 - 0 transcript_id "file_1_g1.t1"; gene_id "file_1_g1"; sample AUGUSTUS exon 1092 1364 . - . transcript_id "file_1_g1.t1"; gene_id "file_1_g1"; sample AUGUSTUS start_codon 1362 1364 . - 0 transcript_id "file_1_g1.t1"; gene_id "file_1_g1"; sample AUGUSTUS gene 1092 1364 0.68 - . g1 sample AUGUSTUS transcript 1092 1364 0.68 - . g1.t1 sample AUGUSTUS start_codon 40692 40694 . + 0 transcript_id "file_1_g9.t1"; gene_id "file_1_g9"; sample AUGUSTUS CDS 40692 41193 0.54 + 0 transcript_id "file_1_g9.t1"; gene_id "file_1_g9"; sample AUGUSTUS exon 40692 41193 . + . transcript_id "file_1_g9.t1"; gene_id "file_1_g9"; sample AUGUSTUS intron 41194 41706 0.54 + . transcript_id "file_1_g9.t1"; gene_id "file_1_g9"; sample AUGUSTUS CDS 41707 42103 0.64 + 2 transcript_id "file_1_g9.t1"; gene_id "file_1_g9"; sample AUGUSTUS exon 41707 42103 . + . transcript_id "file_1_g9.t1"; gene_id "file_1_g9"; sample AUGUSTUS intron 42104 43371 0.21 + . transcript_id "file_1_g9.t1"; gene_id "file_1_g9"; sample AUGUSTUS CDS 43372 43609 0.14 + 1 transcript_id "file_1_g9.t1"; gene_id "file_1_g9"; sample AUGUSTUS exon 43372 43609 . + . transcript_id "file_1_g9.t1"; gene_id "file_1_g9"; sample AUGUSTUS intron 43610 43677 0.46 + . transcript_id "file_1_g9.t1"; gene_id "file_1_g9"; sample AUGUSTUS CDS 43678 44130 0.46 + 0 transcript_id "file_1_g9.t1"; gene_id "file_1_g9"; sample AUGUSTUS gene 40692 44130 0.05 + . g9 sample AUGUSTUS transcript 40692 44130 0.05 + . g9.t1 sample AUGUSTUS exon 43678 44130 . + . transcript_id "file_1_g9.t1"; gene_id "file_1_g9"; sample AUGUSTUS stop_codon 44128 44130 . + 0 transcript_id "file_1_g9.t1"; gene_id "file_1_g9"; sample GeneMark.hmm3 stop_codon 209044 209046 . - 0 gene_id "file_2_21_g"; transcript_id "file_2_21_t"; sample GeneMark.hmm3 CDS 209044 210492 . - 0 gene_id "file_2_21_g"; transcript_id "file_2_21_t"; cds_type "file_2_Terminal"; count "file_2_1_1"; sample GeneMark.hmm3 gene 209044 210492 . - . gene_id "file_2_21_g"; transcript_id "file_2_21_t"; sample GeneMark.hmm3 mRNA 209044 210492 . - . gene_id "file_2_21_g"; transcript_id "file_2_21_t"; sample GeneMark.hmm3 start_codon 194065 194067 . + 0 gene_id "file_2_20_g"; transcript_id "file_2_20_t"; sample GeneMark.hmm3 CDS 194065 194428 . + 0 gene_id "file_2_20_g"; transcript_id "file_2_20_t"; cds_type "file_2_Initial"; count "file_2_1_2"; sample GeneMark.hmm3 intron 194429 194517 . + 1 gene_id "file_2_20_g"; transcript_id "file_2_20_t"; sample GeneMark.hmm3 gene 194065 194669 . + . gene_id "file_2_20_g"; transcript_id "file_2_20_t"; sample GeneMark.hmm3 mRNA 194065 194669 . + . gene_id "file_2_20_g"; transcript_id "file_2_20_t"; sample GeneMark.hmm3 CDS 194518 194669 . + 2 gene_id "file_2_20_g"; transcript_id "file_2_20_t"; cds_type "file_2_Terminal"; count "file_2_2_2"; sample GeneMark.hmm3 stop_codon 194667 194669 . + 0 gene_id "file_2_20_g"; transcript_id "file_2_20_t"; sample AUGUSTUS start_codon 115274 115276 . + 0 transcript_id "file_1_g16.t1"; gene_id "file_1_g16"; sample AUGUSTUS CDS 115274 116488 0.87 + 0 transcript_id "file_1_g16.t1"; gene_id "file_1_g16"; sample AUGUSTUS exon 115274 116488 . + . transcript_id "file_1_g16.t1"; gene_id "file_1_g16"; sample AUGUSTUS stop_codon 116486 116488 . + 0 transcript_id "file_1_g16.t1"; gene_id "file_1_g16"; sample AUGUSTUS gene 115274 116488 0.87 + . g16 sample AUGUSTUS transcript 115274 116488 0.87 + . g16.t1 sample AUGUSTUS stop_codon 100542 100544 . - 0 transcript_id "file_1_g15.t1"; gene_id "file_1_g15"; sample AUGUSTUS CDS 100542 100756 0.3 - 2 transcript_id "file_1_g15.t1"; gene_id "file_1_g15"; sample AUGUSTUS exon 100542 100756 . - . transcript_id "file_1_g15.t1"; gene_id "file_1_g15"; sample AUGUSTUS intron 100757 102520 0.32 - . transcript_id "file_1_g15.t1"; gene_id "file_1_g15"; sample AUGUSTUS CDS 102521 103133 0.26 - 0 transcript_id "file_1_g15.t1"; gene_id "file_1_g15"; sample AUGUSTUS exon 102521 103133 . - . transcript_id "file_1_g15.t1"; gene_id "file_1_g15"; sample AUGUSTUS intron 103134 103264 0.25 - . transcript_id "file_1_g15.t1"; gene_id "file_1_g15"; sample AUGUSTUS CDS 103265 104819 0.09 - 1 transcript_id "file_1_g15.t1"; gene_id "file_1_g15"; sample AUGUSTUS exon 103265 104819 . - . transcript_id "file_1_g15.t1"; gene_id "file_1_g15"; sample AUGUSTUS intron 104820 108228 0.15 - . transcript_id "file_1_g15.t1"; gene_id "file_1_g15"; sample AUGUSTUS CDS 108229 108299 0.42 - 0 transcript_id "file_1_g15.t1"; gene_id "file_1_g15"; sample AUGUSTUS gene 100542 108299 0.02 - . g15 sample AUGUSTUS transcript 100542 108299 0.02 - . g15.t1 sample AUGUSTUS exon 108229 108299 . - . transcript_id "file_1_g15.t1"; gene_id "file_1_g15"; sample AUGUSTUS start_codon 108297 108299 . - 0 transcript_id "file_1_g15.t1"; gene_id "file_1_g15"; sample GeneMark.hmm3 stop_codon 45489 45491 . - 0 gene_id "file_2_8_g"; transcript_id "file_2_8_t"; sample GeneMark.hmm3 CDS 45489 45611 . - 0 gene_id "file_2_8_g"; transcript_id "file_2_8_t"; cds_type "file_2_Terminal"; count "file_2_2_2"; sample GeneMark.hmm3 intron 45612 45727 . - 0 gene_id "file_2_8_g"; transcript_id "file_2_8_t"; sample GeneMark.hmm3 gene 45489 46114 . - . gene_id "file_2_8_g"; transcript_id "file_2_8_t"; sample GeneMark.hmm3 mRNA 45489 46114 . - . gene_id "file_2_8_g"; transcript_id "file_2_8_t"; sample GeneMark.hmm3 CDS 45728 46114 . - 0 gene_id "file_2_8_g"; transcript_id "file_2_8_t"; cds_type "file_2_Initial"; count "file_2_1_2"; sample GeneMark.hmm3 start_codon 46112 46114 . - 0 gene_id "file_2_8_g"; transcript_id "file_2_8_t"; sample AUGUSTUS stop_codon 27589 27591 . - 0 transcript_id "file_1_g6.t1"; gene_id "file_1_g6"; sample AUGUSTUS CDS 27589 28143 0.2 - 0 transcript_id "file_1_g6.t1"; gene_id "file_1_g6"; sample AUGUSTUS exon 27589 28143 . - . transcript_id "file_1_g6.t1"; gene_id "file_1_g6"; sample AUGUSTUS start_codon 28141 28143 . - 0 transcript_id "file_1_g6.t1"; gene_id "file_1_g6"; sample AUGUSTUS gene 27589 28143 0.2 - . g6 sample AUGUSTUS transcript 27589 28143 0.2 - . g6.t1 sample GeneMark.hmm3 stop_codon 56484 56486 . - 0 gene_id "file_2_10_g"; transcript_id "file_2_10_t"; sample GeneMark.hmm3 CDS 56484 56885 . - 0 gene_id "file_2_10_g"; transcript_id "file_2_10_t"; cds_type "file_2_Single"; count "file_2_1_1"; sample GeneMark.hmm3 gene 56484 56885 . - . gene_id "file_2_10_g"; transcript_id "file_2_10_t"; sample GeneMark.hmm3 mRNA 56484 56885 . - . gene_id "file_2_10_g"; transcript_id "file_2_10_t"; sample GeneMark.hmm3 start_codon 56883 56885 . - 0 gene_id "file_2_10_g"; transcript_id "file_2_10_t"; sample AUGUSTUS stop_codon 56484 56486 . - 0 transcript_id "file_1_g11.t1"; gene_id "file_1_g11"; sample AUGUSTUS CDS 56484 56821 0.37 - 2 transcript_id "file_1_g11.t1"; gene_id "file_1_g11"; sample AUGUSTUS exon 56484 56821 . - . transcript_id "file_1_g11.t1"; gene_id "file_1_g11"; sample AUGUSTUS intron 56822 57445 0.37 - . transcript_id "file_1_g11.t1"; gene_id "file_1_g11"; sample AUGUSTUS CDS 57446 57566 0.07 - 0 transcript_id "file_1_g11.t1"; gene_id "file_1_g11"; sample AUGUSTUS gene 56484 57566 0.06 - . g11 sample AUGUSTUS transcript 56484 57566 0.06 - . g11.t1 sample AUGUSTUS exon 57446 57566 . - . transcript_id "file_1_g11.t1"; gene_id "file_1_g11"; sample AUGUSTUS start_codon 57564 57566 . - 0 transcript_id "file_1_g11.t1"; gene_id "file_1_g11"; sample GeneMark.hmm3 start_codon 40638 40640 . + 0 gene_id "file_2_7_g"; transcript_id "file_2_7_t"; sample GeneMark.hmm3 CDS 40638 41193 . + 0 gene_id "file_2_7_g"; transcript_id "file_2_7_t"; cds_type "file_2_Initial"; count "file_2_1_2"; sample GeneMark.hmm3 intron 41194 43606 . + 1 gene_id "file_2_7_g"; transcript_id "file_2_7_t"; sample GeneMark.hmm3 gene 40638 44130 . + . gene_id "file_2_7_g"; transcript_id "file_2_7_t"; sample GeneMark.hmm3 mRNA 40638 44130 . + . gene_id "file_2_7_g"; transcript_id "file_2_7_t"; sample GeneMark.hmm3 CDS 43607 44130 . + 2 gene_id "file_2_7_g"; transcript_id "file_2_7_t"; cds_type "file_2_Terminal"; count "file_2_2_2"; sample GeneMark.hmm3 stop_codon 44128 44130 . + 0 gene_id "file_2_7_g"; transcript_id "file_2_7_t"; sample GeneMark.hmm3 stop_codon 74172 74174 . - 0 gene_id "file_2_11_g"; transcript_id "file_2_11_t"; sample GeneMark.hmm3 CDS 74172 74318 . - 0 gene_id "file_2_11_g"; transcript_id "file_2_11_t"; cds_type "file_2_Terminal"; count "file_2_2_2"; sample GeneMark.hmm3 intron 74319 79516 . - 0 gene_id "file_2_11_g"; transcript_id "file_2_11_t"; sample GeneMark.hmm3 gene 74172 80527 . - . gene_id "file_2_11_g"; transcript_id "file_2_11_t"; sample GeneMark.hmm3 mRNA 74172 80527 . - . gene_id "file_2_11_g"; transcript_id "file_2_11_t"; sample GeneMark.hmm3 CDS 79517 80527 . - 0 gene_id "file_2_11_g"; transcript_id "file_2_11_t"; cds_type "file_2_Initial"; count "file_2_1_2"; sample GeneMark.hmm3 start_codon 80525 80527 . - 0 gene_id "file_2_11_g"; transcript_id "file_2_11_t"; sample GeneMark.hmm3 stop_codon 46749 46751 . - 0 gene_id "file_2_9_g"; transcript_id "file_2_9_t"; sample GeneMark.hmm3 CDS 46749 47339 . - 0 gene_id "file_2_9_g"; transcript_id "file_2_9_t"; cds_type "file_2_Single"; count "file_2_1_1"; sample GeneMark.hmm3 gene 46749 47339 . - . gene_id "file_2_9_g"; transcript_id "file_2_9_t"; sample GeneMark.hmm3 mRNA 46749 47339 . - . gene_id "file_2_9_g"; transcript_id "file_2_9_t"; sample GeneMark.hmm3 start_codon 47337 47339 . - 0 gene_id "file_2_9_g"; transcript_id "file_2_9_t"; sample AUGUSTUS stop_codon 73851 73853 . - 0 transcript_id "file_1_g13.t1"; gene_id "file_1_g13"; sample AUGUSTUS CDS 73851 74116 0.56 - 2 transcript_id "file_1_g13.t1"; gene_id "file_1_g13"; sample AUGUSTUS exon 73851 74116 . - . transcript_id "file_1_g13.t1"; gene_id "file_1_g13"; sample AUGUSTUS intron 74117 79000 . - . transcript_id "file_1_g13.t1"; gene_id "file_1_g13"; sample AUGUSTUS CDS 79001 79010 0.01 - 0 transcript_id "file_1_g13.t1"; gene_id "file_1_g13"; sample AUGUSTUS gene 73851 79010 0 - . g13 sample AUGUSTUS transcript 73851 79010 . - . g13.t1 sample AUGUSTUS exon 79001 79010 . - . transcript_id "file_1_g13.t1"; gene_id "file_1_g13"; sample AUGUSTUS start_codon 79008 79010 . - 0 transcript_id "file_1_g13.t1"; gene_id "file_1_g13"; sample GeneMark.hmm3 CDS 2258 3224 . + 1 gene_id "file_2_1_g"; transcript_id "file_2_1_t"; cds_type "file_2_Internal"; count "file_2_1_3"; sample GeneMark.hmm3 intron 3225 3283 . + 0 gene_id "file_2_1_g"; transcript_id "file_2_1_t"; sample GeneMark.hmm3 CDS 3284 3755 . + 0 gene_id "file_2_1_g"; transcript_id "file_2_1_t"; cds_type "file_2_Internal"; count "file_2_2_3"; sample GeneMark.hmm3 intron 3756 4934 . + 1 gene_id "file_2_1_g"; transcript_id "file_2_1_t"; sample GeneMark.hmm3 gene 2258 5707 . + . gene_id "file_2_1_g"; transcript_id "file_2_1_t"; sample GeneMark.hmm3 mRNA 2258 5707 . + . gene_id "file_2_1_g"; transcript_id "file_2_1_t"; sample GeneMark.hmm3 CDS 4935 5707 . + 2 gene_id "file_2_1_g"; transcript_id "file_2_1_t"; cds_type "file_2_Terminal"; count "file_2_3_3"; sample GeneMark.hmm3 stop_codon 5705 5707 . + 0 gene_id "file_2_1_g"; transcript_id "file_2_1_t"; sample AUGUSTUS start_codon 167121 167123 . + 0 transcript_id "file_1_g21.t1"; gene_id "file_1_g21"; sample AUGUSTUS CDS 167121 168360 1 + 0 transcript_id "file_1_g21.t1"; gene_id "file_1_g21"; sample AUGUSTUS exon 167121 168360 . + . transcript_id "file_1_g21.t1"; gene_id "file_1_g21"; sample AUGUSTUS intron 168361 168721 1 + . transcript_id "file_1_g21.t1"; gene_id "file_1_g21"; sample AUGUSTUS CDS 168722 169167 1 + 2 transcript_id "file_1_g21.t1"; gene_id "file_1_g21"; sample AUGUSTUS exon 168722 169167 . + . transcript_id "file_1_g21.t1"; gene_id "file_1_g21"; sample AUGUSTUS intron 169168 172584 0.87 + . transcript_id "file_1_g21.t1"; gene_id "file_1_g21"; sample AUGUSTUS CDS 172585 172957 0.81 + 0 transcript_id "file_1_g21.t1"; gene_id "file_1_g21"; sample AUGUSTUS exon 172585 172957 . + . transcript_id "file_1_g21.t1"; gene_id "file_1_g21"; sample AUGUSTUS intron 172958 180019 0.41 + . transcript_id "file_1_g21.t1"; gene_id "file_1_g21"; sample AUGUSTUS CDS 180020 180579 0.57 + 2 transcript_id "file_1_g21.t1"; gene_id "file_1_g21"; sample AUGUSTUS gene 167121 180579 0.22 + . g21 sample AUGUSTUS transcript 167121 180579 0.22 + . g21.t1 sample AUGUSTUS exon 180020 180579 . + . transcript_id "file_1_g21.t1"; gene_id "file_1_g21"; sample AUGUSTUS stop_codon 180577 180579 . + 0 transcript_id "file_1_g21.t1"; gene_id "file_1_g21"; sample AUGUSTUS stop_codon 14247 14249 . - 0 transcript_id "file_1_g4.t1"; gene_id "file_1_g4"; sample AUGUSTUS CDS 14247 14659 0.67 - 2 transcript_id "file_1_g4.t1"; gene_id "file_1_g4"; sample AUGUSTUS exon 14247 14659 . - . transcript_id "file_1_g4.t1"; gene_id "file_1_g4"; sample AUGUSTUS intron 14660 14793 0.68 - . transcript_id "file_1_g4.t1"; gene_id "file_1_g4"; sample AUGUSTUS CDS 14794 14952 1 - 2 transcript_id "file_1_g4.t1"; gene_id "file_1_g4"; sample AUGUSTUS exon 14794 14952 . - . transcript_id "file_1_g4.t1"; gene_id "file_1_g4"; sample AUGUSTUS intron 14953 15360 1 - . transcript_id "file_1_g4.t1"; gene_id "file_1_g4"; sample AUGUSTUS CDS 15361 17164 1 - 0 transcript_id "file_1_g4.t1"; gene_id "file_1_g4"; sample AUGUSTUS exon 15361 17164 . - . transcript_id "file_1_g4.t1"; gene_id "file_1_g4"; sample AUGUSTUS intron 17165 17295 1 - . transcript_id "file_1_g4.t1"; gene_id "file_1_g4"; sample AUGUSTUS CDS 17296 18096 0.99 - 0 transcript_id "file_1_g4.t1"; gene_id "file_1_g4"; sample AUGUSTUS exon 17296 18096 . - . transcript_id "file_1_g4.t1"; gene_id "file_1_g4"; sample AUGUSTUS intron 18097 18220 0.99 - . transcript_id "file_1_g4.t1"; gene_id "file_1_g4"; sample AUGUSTUS CDS 18221 18259 0.99 - 0 transcript_id "file_1_g4.t1"; gene_id "file_1_g4"; sample AUGUSTUS exon 18221 18259 . - . transcript_id "file_1_g4.t1"; gene_id "file_1_g4"; sample AUGUSTUS intron 18260 18462 0.95 - . transcript_id "file_1_g4.t1"; gene_id "file_1_g4"; sample AUGUSTUS CDS 18463 19499 0.99 - 2 transcript_id "file_1_g4.t1"; gene_id "file_1_g4"; sample AUGUSTUS exon 18463 19499 . - . transcript_id "file_1_g4.t1"; gene_id "file_1_g4"; sample AUGUSTUS intron 19500 19606 1 - . transcript_id "file_1_g4.t1"; gene_id "file_1_g4"; sample AUGUSTUS CDS 19607 21542 1 - 0 transcript_id "file_1_g4.t1"; gene_id "file_1_g4"; sample AUGUSTUS gene 14247 21542 0.62 - . g4 sample AUGUSTUS transcript 14247 21542 0.62 - . g4.t1 sample AUGUSTUS exon 19607 21542 . - . transcript_id "file_1_g4.t1"; gene_id "file_1_g4"; sample AUGUSTUS start_codon 21540 21542 . - 0 transcript_id "file_1_g4.t1"; gene_id "file_1_g4"; sample GeneMark.hmm3 start_codon 153389 153391 . + 0 gene_id "file_2_17_g"; transcript_id "file_2_17_t"; sample GeneMark.hmm3 CDS 153389 159010 . + 0 gene_id "file_2_17_g"; transcript_id "file_2_17_t"; cds_type "file_2_Initial"; count "file_2_1_2"; sample GeneMark.hmm3 intron 159011 159116 . + 0 gene_id "file_2_17_g"; transcript_id "file_2_17_t"; sample GeneMark.hmm3 gene 153389 164495 . + . gene_id "file_2_17_g"; transcript_id "file_2_17_t"; sample GeneMark.hmm3 mRNA 153389 164495 . + . gene_id "file_2_17_g"; transcript_id "file_2_17_t"; sample GeneMark.hmm3 CDS 159117 164495 . + 0 gene_id "file_2_17_g"; transcript_id "file_2_17_t"; cds_type "file_2_Terminal"; count "file_2_2_2"; sample GeneMark.hmm3 stop_codon 164493 164495 . + 0 gene_id "file_2_17_g"; transcript_id "file_2_17_t"; sample GeneMark.hmm3 stop_codon 97476 97478 . - 0 gene_id "file_2_13_g"; transcript_id "file_2_13_t"; sample GeneMark.hmm3 CDS 97476 97573 . - 2 gene_id "file_2_13_g"; transcript_id "file_2_13_t"; cds_type "file_2_Terminal"; count "file_2_5_5"; sample GeneMark.hmm3 intron 97574 102520 . - 1 gene_id "file_2_13_g"; transcript_id "file_2_13_t"; sample GeneMark.hmm3 CDS 102521 103151 . - 0 gene_id "file_2_13_g"; transcript_id "file_2_13_t"; cds_type "file_2_Internal"; count "file_2_4_5"; sample GeneMark.hmm3 intron 103152 103222 . - 0 gene_id "file_2_13_g"; transcript_id "file_2_13_t"; sample GeneMark.hmm3 CDS 103223 103812 . - 2 gene_id "file_2_13_g"; transcript_id "file_2_13_t"; cds_type "file_2_Internal"; count "file_2_3_5"; sample GeneMark.hmm3 intron 103813 111230 . - 1 gene_id "file_2_13_g"; transcript_id "file_2_13_t"; sample GeneMark.hmm3 CDS 111231 111342 . - 0 gene_id "file_2_13_g"; transcript_id "file_2_13_t"; cds_type "file_2_Internal"; count "file_2_2_5"; sample GeneMark.hmm3 intron 111343 113595 . - 0 gene_id "file_2_13_g"; transcript_id "file_2_13_t"; sample GeneMark.hmm3 gene 97476 113919 . - . gene_id "file_2_13_g"; transcript_id "file_2_13_t"; sample GeneMark.hmm3 mRNA 97476 113919 . - . gene_id "file_2_13_g"; transcript_id "file_2_13_t"; sample GeneMark.hmm3 CDS 113596 113919 . - 0 gene_id "file_2_13_g"; transcript_id "file_2_13_t"; cds_type "file_2_Initial"; count "file_2_1_5"; sample GeneMark.hmm3 start_codon 113917 113919 . - 0 gene_id "file_2_13_g"; transcript_id "file_2_13_t"; sample4 AUGUSTUS stop_codon 1092 1094 . - 0 transcript_id "file_1_g26.t1"; gene_id "file_1_g26"; sample4 AUGUSTUS CDS 1092 1364 0.76 - 0 transcript_id "file_1_g26.t1"; gene_id "file_1_g26"; sample4 AUGUSTUS exon 1092 1364 . - . transcript_id "file_1_g26.t1"; gene_id "file_1_g26"; sample4 AUGUSTUS start_codon 1362 1364 . - 0 transcript_id "file_1_g26.t1"; gene_id "file_1_g26"; sample4 AUGUSTUS gene 1092 1364 0.76 - . g26 sample4 AUGUSTUS transcript 1092 1364 0.76 - . g26.t1 sample AUGUSTUS stop_codon 34843 34845 . - 0 transcript_id "file_1_g7.t1"; gene_id "file_1_g7"; sample AUGUSTUS CDS 34843 35679 0.35 - 0 transcript_id "file_1_g7.t1"; gene_id "file_1_g7"; sample AUGUSTUS exon 34843 35679 . - . transcript_id "file_1_g7.t1"; gene_id "file_1_g7"; sample AUGUSTUS start_codon 35677 35679 . - 0 transcript_id "file_1_g7.t1"; gene_id "file_1_g7"; sample AUGUSTUS gene 34843 35679 0.35 - . g7 sample AUGUSTUS transcript 34843 35679 0.35 - . g7.t1 sample AUGUSTUS stop_codon 40166 40168 . - 0 transcript_id "file_1_g8.t1"; gene_id "file_1_g8"; sample AUGUSTUS CDS 40166 40531 0.99 - 0 transcript_id "file_1_g8.t1"; gene_id "file_1_g8"; sample AUGUSTUS exon 40166 40531 . - . transcript_id "file_1_g8.t1"; gene_id "file_1_g8"; sample AUGUSTUS start_codon 40529 40531 . - 0 transcript_id "file_1_g8.t1"; gene_id "file_1_g8"; sample AUGUSTUS gene 40166 40531 0.99 - . g8 sample AUGUSTUS transcript 40166 40531 0.99 - . g8.t1 sample4 AUGUSTUS start_codon 2126 2128 . + 0 transcript_id "file_1_g27.t1"; gene_id "file_1_g27"; sample4 AUGUSTUS CDS 2126 2199 1 + 0 transcript_id "file_1_g27.t1"; gene_id "file_1_g27"; sample4 AUGUSTUS exon 2126 2199 . + . transcript_id "file_1_g27.t1"; gene_id "file_1_g27"; sample4 AUGUSTUS intron 2200 2257 1 + . transcript_id "file_1_g27.t1"; gene_id "file_1_g27"; sample4 AUGUSTUS CDS 2258 3224 0.45 + 1 transcript_id "file_1_g27.t1"; gene_id "file_1_g27"; sample4 AUGUSTUS exon 2258 3224 . + . transcript_id "file_1_g27.t1"; gene_id "file_1_g27"; sample4 AUGUSTUS intron 3225 3283 0.33 + . transcript_id "file_1_g27.t1"; gene_id "file_1_g27"; sample4 AUGUSTUS CDS 3284 3512 0.14 + 0 transcript_id "file_1_g27.t1"; gene_id "file_1_g27"; sample4 AUGUSTUS exon 3284 3512 . + . transcript_id "file_1_g27.t1"; gene_id "file_1_g27"; sample4 AUGUSTUS intron 3513 3807 0.22 + . transcript_id "file_1_g27.t1"; gene_id "file_1_g27"; sample4 AUGUSTUS CDS 3808 3863 0.59 + 2 transcript_id "file_1_g27.t1"; gene_id "file_1_g27"; sample4 AUGUSTUS gene 2126 3863 0.07 + . g27 sample4 AUGUSTUS transcript 2126 3863 0.07 + . g27.t1 sample4 AUGUSTUS exon 3808 3863 . + . transcript_id "file_1_g27.t1"; gene_id "file_1_g27"; sample4 AUGUSTUS stop_codon 3861 3863 . + 0 transcript_id "file_1_g27.t1"; gene_id "file_1_g27";