Mercurial > repos > genouest > braker3
changeset 5:3452c806c478 draft
planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/braker commit 5bcf6a26284965f4fbf04be67ae7c186bb7e908f
| author | genouest |
|---|---|
| date | Mon, 12 Feb 2024 10:38:15 +0000 |
| parents | 96ad8f880755 |
| children | ea8c29a71a76 |
| files | braker3.xml macros.xml |
| diffstat | 2 files changed, 7 insertions(+), 3 deletions(-) [+] |
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--- a/braker3.xml Wed Jan 31 06:49:47 2024 +0000 +++ b/braker3.xml Mon Feb 12 10:38:15 2024 +0000 @@ -16,6 +16,10 @@ export PATH="\$GENEMARK_PATH/../tools/:\$PATH" && +## Copy Augustus config dir to work dir, to make sure it's writable when running with containers +cp -r "\$AUGUSTUS_CONFIG_PATH/" augustus_dir/ && +export AUGUSTUS_CONFIG_PATH=`pwd`/augustus_dir/ && + braker.pl --genome '${genome}' $softmasking @@ -133,7 +137,7 @@ <filter>output_format == 'gff3'</filter> </data> </outputs> - + <tests> <test expect_failure="true"> <param name="genome" value="genome_masked.fa"/> @@ -183,7 +187,7 @@ <output name="output_gff" file="out_genome/braker.gff3"/> </test> --> - + <help><![CDATA[ Braker3_ allows for fully automated training of the gene prediction tools GeneMark-EX and AUGUSTUS from RNA-Seq and/or protein homology information, and that integrates the extrinsic evidence from RNA-Seq and protein homology information into the prediction.
--- a/macros.xml Wed Jan 31 06:49:47 2024 +0000 +++ b/macros.xml Mon Feb 12 10:38:15 2024 +0000 @@ -1,7 +1,7 @@ <?xml version="1.0"?> <macros> <token name="@TOOL_VERSION@">3.0.7</token> - <token name="@VERSION_SUFFIX@">2</token> + <token name="@VERSION_SUFFIX@">3</token> <xml name="requirements"> <requirement type="package" version="@TOOL_VERSION@">braker3</requirement>