Mercurial > repos > genouest > helixer

diff test-data/ouput_species.gff3 @ 0:1b08e39cc52d draft

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planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/helixer commit 8f0b5d30f8f5daea0f6c03293c8593ac24d9e1b7
author genouest
date Wed, 28 Jun 2023 08:39:38 +0000
parents
children 7bc75dd0f782
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/ouput_species.gff3	Wed Jun 28 08:39:38 2023 +0000
@@ -0,0 +1,17 @@
+##gff-version 3.2.1
+##species Arabidopsis
+# f0e00efcbea83c66b69258d11119a691  /tmp/tmpg9ws2pgr/job_working_directory/000/4/home/.local/share/Helixer/models/land_plant/land_plant_v0.3_a_0080.h5
+##sequence-region NC_034365.1:c72045-70009 1 2037
+NC_034365.1:c72045-70009	Helixer	gene	1035	1269	.	+	.	ID=Arabidopsis_NC_034365.1:c72045-70009_000001
+NC_034365.1:c72045-70009	Helixer	mRNA	1035	1269	.	+	.	ID=Arabidopsis_NC_034365.1:c72045-70009_000001.1;Parent=Arabidopsis_NC_034365.1:c72045-70009_000001
+NC_034365.1:c72045-70009	Helixer	exon	1035	1269	.	+	.	ID=Arabidopsis_NC_034365.1:c72045-70009_000001.1.exon.1;Parent=Arabidopsis_NC_034365.1:c72045-70009_000001.1
+NC_034365.1:c72045-70009	Helixer	five_prime_UTR	1035	1035	.	+	.	ID=Arabidopsis_NC_034365.1:c72045-70009_000001.1.five_prime_UTR.1;Parent=Arabidopsis_NC_034365.1:c72045-70009_000001.1
+NC_034365.1:c72045-70009	Helixer	CDS	1036	1260	.	+	0	ID=Arabidopsis_NC_034365.1:c72045-70009_000001.1.CDS.1;Parent=Arabidopsis_NC_034365.1:c72045-70009_000001.1
+NC_034365.1:c72045-70009	Helixer	three_prime_UTR	1261	1269	.	+	.	ID=Arabidopsis_NC_034365.1:c72045-70009_000001.1.three_prime_UTR.1;Parent=Arabidopsis_NC_034365.1:c72045-70009_000001.1
+NC_034365.1:c72045-70009	Helixer	gene	1603	2037	.	+	.	ID=Arabidopsis_NC_034365.1:c72045-70009_000002
+NC_034365.1:c72045-70009	Helixer	mRNA	1603	2037	.	+	.	ID=Arabidopsis_NC_034365.1:c72045-70009_000002.1;Parent=Arabidopsis_NC_034365.1:c72045-70009_000002
+NC_034365.1:c72045-70009	Helixer	exon	1603	1725	.	+	.	ID=Arabidopsis_NC_034365.1:c72045-70009_000002.1.exon.1;Parent=Arabidopsis_NC_034365.1:c72045-70009_000002.1
+NC_034365.1:c72045-70009	Helixer	five_prime_UTR	1603	1606	.	+	.	ID=Arabidopsis_NC_034365.1:c72045-70009_000002.1.five_prime_UTR.1;Parent=Arabidopsis_NC_034365.1:c72045-70009_000002.1
+NC_034365.1:c72045-70009	Helixer	CDS	1607	1725	.	+	0	ID=Arabidopsis_NC_034365.1:c72045-70009_000002.1.CDS.1;Parent=Arabidopsis_NC_034365.1:c72045-70009_000002.1
+NC_034365.1:c72045-70009	Helixer	exon	1812	2037	.	+	.	ID=Arabidopsis_NC_034365.1:c72045-70009_000002.1.exon.2;Parent=Arabidopsis_NC_034365.1:c72045-70009_000002.1
+NC_034365.1:c72045-70009	Helixer	CDS	1812	2037	.	+	1	ID=Arabidopsis_NC_034365.1:c72045-70009_000002.1.CDS.2;Parent=Arabidopsis_NC_034365.1:c72045-70009_000002.1