Mercurial > repos > genouest > meneco
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planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/meneco commit 005790d17ea244a50c9ccbd38b50a0608233c8a9
| author | genouest |
|---|---|
| date | Mon, 11 Jun 2018 08:43:56 -0400 |
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<?xml version="1.0" encoding="UTF-8"?> <sbml xmlns="http://www.sbml.org/sbml/level2" level="2" version="1"> <model id="EsiCyc"> <listOfCompartments> <compartment id="CCO__45__IN" name="CCO-IN"/> <compartment id="CCO__45__OUT" name="CCO-OUT"/> <compartment id="CCO__45__CYTOSOL" name="CCO-CYTOSOL"/> </listOfCompartments> <listOfSpecies> <species id="Protein__45__Red__45__Disulfides" name="a protein with reduced sulfide groups: " compartment="CCO__45__CYTOSOL" initialAmount="1000" boundaryCondition="true"/> <species id="Protein__45__Ox__45__Disulfides" name="a protein with oxidized disulfide bonds: " compartment="CCO__45__CYTOSOL" initialAmount="1000" boundaryCondition="true"/> <species id="PHOSPHO__45__ENOL__45__PYRUVATE_CCO__45__IN" name="phosphoenolpyruvate: C3H2O6P" compartment="CCO__45__IN" initialAmount="1000" boundaryCondition="true"/> <species id="Pi_CCO__45__OUT" name="phosphate: HO4P" compartment="CCO__45__OUT" initialAmount="1000" boundaryCondition="true"/> <species 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</listOfProducts> </reaction> <reaction id="METHENYLTHFCYCLOHYDRO__45__RXN" name="METHENYLTHFCYCLOHYDRO-RXN" reversible="false"> <listOfReactants> <speciesReference species="PROTON" stoichiometry="1"/> <speciesReference species="_10__45__FORMYL__45__THF" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="WATER" stoichiometry="1"/> <speciesReference species="_5__45__10__45__METHENYL__45__THF" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="RIBOFLAVINSYNDEAM__45__RXN" name="RIBOFLAVINSYNDEAM-RXN" reversible="true"> <listOfReactants> <speciesReference species="WATER" stoichiometry="1"/> <speciesReference species="DIAMINO__45__OH__45__PHOSPHORIBOSYLAMINO__45__PYR" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="CPD__45__602" stoichiometry="1"/> <speciesReference species="AMMONIA" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="ADENODEAMIN__45__RXN" name="ADENODEAMIN-RXN" reversible="false"> <listOfReactants> <speciesReference species="WATER" stoichiometry="1"/> <speciesReference species="ADENOSINE" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="AMMONIA" stoichiometry="1"/> <speciesReference species="INOSINE" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="IMPCYCLOHYDROLASE__45__RXN" name="IMPCYCLOHYDROLASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="PHOSPHORIBOSYL__45__FORMAMIDO__45__CARBOXAMIDE" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="IMP" stoichiometry="1"/> <speciesReference species="WATER" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="AMP__45__DEAMINASE__45__RXN" name="AMP-DEAMINASE-RXN" reversible="true"> <listOfReactants> <speciesReference species="AMP" stoichiometry="1"/> <speciesReference species="WATER" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="IMP" stoichiometry="1"/> <speciesReference species="AMMONIA" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="GTP__45__CYCLOHYDRO__45__I__45__RXN" name="GTP-CYCLOHYDRO-I-RXN" reversible="true"> <listOfReactants> <speciesReference species="GTP" stoichiometry="1"/> <speciesReference species="WATER" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="PROTON" stoichiometry="1"/> <speciesReference species="FORMATE" stoichiometry="1"/> <speciesReference species="DIHYDRONEOPTERIN__45__P3" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="GTP__45__CYCLOHYDRO__45__II__45__RXN" name="GTP-CYCLOHYDRO-II-RXN" reversible="true"> <listOfReactants> <speciesReference species="WATER" stoichiometry="3"/> <speciesReference species="GTP" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="PROTON" stoichiometry="2"/> <speciesReference species="PPI" stoichiometry="1"/> <speciesReference species="DIAMINO__45__OH__45__PHOSPHORIBOSYLAMINO__45__PYR" stoichiometry="1"/> <speciesReference species="FORMATE" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="THIAMINASE__45__RXN" name="THIAMINASE-RXN" reversible="true"> <listOfReactants> <speciesReference species="WATER" stoichiometry="1"/> <speciesReference species="THIAMINE" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="PROTON" stoichiometry="1"/> <speciesReference species="THZ" stoichiometry="1"/> <speciesReference species="HMP" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="RXN__45__12613" name="RXN-12613" reversible="true"> <listOfReactants> <speciesReference species="CPD__45__13578" stoichiometry="1"/> <speciesReference species="WATER" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="PROTON" stoichiometry="1"/> <speciesReference species="HMP" stoichiometry="1"/> <speciesReference species="AMMONIA" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="RXN__45__4821" name="RXN-4821" reversible="false"> <listOfReactants> <speciesReference species="PROTON" stoichiometry="1"/> <speciesReference species="DELTA1__45__PIPERIDEINE__45__2__45__6__45__DICARBOXYLATE" stoichiometry="1"/> <speciesReference species="WATER" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="L__45__ALPHA__45__AMINO__45__EPSILON__45__KETO__45__PIMELATE" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="_4__46__1__46__99__46__4__45__RXN" name="4.1.99.4-RXN" reversible="true"> <listOfReactants> <speciesReference species="WATER" stoichiometry="1"/> <speciesReference species="CPD__45__68" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="PROTON" stoichiometry="1"/> <speciesReference species="AMMONIA" stoichiometry="1"/> <speciesReference species="_2__45__OXOBUTANOATE" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="DUTP__45__PYROP__45__RXN" name="DUTP-PYROP-RXN" reversible="true"> <listOfReactants> <speciesReference species="DUTP" stoichiometry="1"/> <speciesReference species="WATER" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="PROTON" stoichiometry="1"/> <speciesReference species="DUMP" stoichiometry="1"/> <speciesReference species="PPI" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="ACYLPHOSPHATASE__45__RXN" name="ACYLPHOSPHATASE-RXN" reversible="true"> <listOfReactants> <speciesReference species="WATER" stoichiometry="1"/> <speciesReference species="Acyl__45__Phosphates" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="Pi" stoichiometry="1"/> <speciesReference species="Carboxylates" stoichiometry="1"/> <speciesReference species="PROTON" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="APYRASE__45__RXN" name="APYRASE-RXN" reversible="true"> <listOfReactants> <speciesReference species="WATER" stoichiometry="2"/> <speciesReference species="ATP" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="PROTON" stoichiometry="2"/> <speciesReference species="Pi" stoichiometry="2"/> <speciesReference species="AMP" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="RXN__45__12200" name="RXN-12200" reversible="false"> <listOfReactants> <speciesReference species="WATER" stoichiometry="2"/> <speciesReference species="CTP" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="PROTON" stoichiometry="2"/> <speciesReference species="Pi" stoichiometry="2"/> <speciesReference species="CMP" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="RXN__45__12199" name="RXN-12199" reversible="false"> <listOfReactants> <speciesReference species="WATER" stoichiometry="2"/> <speciesReference species="UTP" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="PROTON" stoichiometry="2"/> <speciesReference species="Pi" stoichiometry="2"/> <speciesReference species="UMP" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="RXN0__45__6382" name="RXN0-6382" reversible="true"> <listOfReactants> <speciesReference species="ITP" stoichiometry="1"/> <speciesReference species="WATER" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="PROTON" stoichiometry="1"/> <speciesReference species="IMP" stoichiometry="1"/> <speciesReference species="PPI" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="ATP__45__PYROPHOSPHATASE__45__RXN" name="ATP-PYROPHOSPHATASE-RXN" reversible="true"> <listOfReactants> <speciesReference species="WATER" stoichiometry="1"/> <speciesReference species="ATP" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="PROTON" stoichiometry="1"/> <speciesReference species="PPI" stoichiometry="1"/> <speciesReference species="AMP" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="DOLICHYLDIPHOSPHATASE__45__RXN" name="DOLICHYLDIPHOSPHATASE-RXN" reversible="true"> <listOfReactants> <speciesReference species="CPD__45__224" stoichiometry="1"/> <speciesReference species="WATER" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="DOLICHOLP" stoichiometry="1"/> <speciesReference species="PROTON" stoichiometry="1"/> <speciesReference species="Pi" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="ADENOSINETRIPHOSPHATASE__45__RXN" name="ADENOSINETRIPHOSPHATASE-RXN" reversible="true"> <listOfReactants> <speciesReference species="WATER" stoichiometry="1"/> <speciesReference species="ATP" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="PROTON" stoichiometry="1"/> <speciesReference species="Pi" stoichiometry="1"/> <speciesReference species="ADP" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="INORGPYROPHOSPHAT__45__RXN" name="INORGPYROPHOSPHAT-RXN" reversible="false"> <listOfReactants> <speciesReference species="WATER" stoichiometry="1"/> <speciesReference species="PPI" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="PROTON" stoichiometry="1"/> <speciesReference species="Pi" stoichiometry="2"/> </listOfProducts> </reaction> <reaction id="NUCLEOSIDE__45__TRIPHOSPHATASE__45__RXN" name="NUCLEOSIDE-TRIPHOSPHATASE-RXN" reversible="false"> <listOfReactants> <speciesReference species="WATER" stoichiometry="1"/> <speciesReference species="Nucleoside__45__Triphosphates" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="Pi" stoichiometry="1"/> <speciesReference species="Nucleoside__45__Diphosphates" stoichiometry="1"/> <speciesReference species="PROTON" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="RXN__45__12195" name="RXN-12195" reversible="false"> <listOfReactants> <speciesReference species="WATER" stoichiometry="1"/> <speciesReference species="CTP" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="PROTON" stoichiometry="1"/> <speciesReference species="Pi" stoichiometry="1"/> <speciesReference species="CDP" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="RXN__45__12196" name="RXN-12196" reversible="false"> <listOfReactants> <speciesReference species="WATER" stoichiometry="1"/> <speciesReference species="UTP" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="PROTON" stoichiometry="1"/> <speciesReference species="Pi" stoichiometry="1"/> <speciesReference species="UDP" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="RXN__45__12197" name="RXN-12197" reversible="false"> <listOfReactants> <speciesReference species="UDP" stoichiometry="1"/> <speciesReference species="WATER" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="Pi" stoichiometry="1"/> <speciesReference species="UMP" stoichiometry="1"/> <speciesReference species="PROTON" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="RXN__45__12198" name="RXN-12198" reversible="false"> <listOfReactants> <speciesReference species="CDP" stoichiometry="1"/> <speciesReference species="WATER" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="Pi" stoichiometry="1"/> <speciesReference species="CMP" stoichiometry="1"/> <speciesReference species="PROTON" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="HISTPRATPHYD__45__RXN" name="HISTPRATPHYD-RXN" reversible="true"> <listOfReactants> <speciesReference species="PHOSPHORIBOSYL__45__ATP" stoichiometry="1"/> <speciesReference species="WATER" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="PHOSPHORIBOSYL__45__AMP" stoichiometry="1"/> <speciesReference species="PPI" stoichiometry="1"/> <speciesReference species="PROTON" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="RXN0__45__1441" name="RXN0-1441" reversible="true"> <listOfReactants> <speciesReference species="ADENOSINE_DIPHOSPHATE_RIBOSE" stoichiometry="1"/> <speciesReference species="WATER" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="PROTON" stoichiometry="2"/> <speciesReference species="AMP" stoichiometry="1"/> <speciesReference species="RIBOSE__45__5P" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="_3__46__6__46__3__46__16__45__RXN" name="3.6.3.16-RXN" reversible="true"> <listOfReactants> <speciesReference species="CPD__45__763_CCO__45__IN" stoichiometry="1"/> <speciesReference species="WATER_CCO__45__IN" stoichiometry="1"/> <speciesReference species="ATP_CCO__45__IN" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="CPD__45__763_CCO__45__OUT" stoichiometry="1"/> <speciesReference species="Pi_CCO__45__IN" stoichiometry="1"/> <speciesReference species="ADP_CCO__45__IN" stoichiometry="1"/> <speciesReference species="PROTON_CCO__45__IN" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="_3__46__6__46__3__46__4__45__RXN" name="3.6.3.4-RXN" reversible="false"> <listOfReactants> <speciesReference species="CU__43__2_CCO__45__IN" stoichiometry="1"/> <speciesReference species="ATP_CCO__45__IN" stoichiometry="1"/> <speciesReference species="WATER_CCO__45__IN" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="CU__43__2_CCO__45__OUT" stoichiometry="1"/> <speciesReference species="ADP_CCO__45__IN" stoichiometry="1"/> <speciesReference species="Pi_CCO__45__IN" stoichiometry="1"/> <speciesReference species="PROTON_CCO__45__IN" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="_3__46__6__46__3__46__6__45__RXN" name="3.6.3.6-RXN" reversible="true"> <listOfReactants> <speciesReference species="PROTON_CCO__45__IN" stoichiometry="1"/> <speciesReference species="ATP_CCO__45__IN" stoichiometry="1"/> <speciesReference species="WATER_CCO__45__IN" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="PROTON_CCO__45__OUT" stoichiometry="1"/> <speciesReference species="ADP_CCO__45__IN" stoichiometry="1"/> <speciesReference species="Pi_CCO__45__IN" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="ATPSYN__45__RXN" name="ATPSYN-RXN" reversible="true"> <listOfReactants> <speciesReference species="PROTON_CCO__45__IN" stoichiometry="3"/> <speciesReference species="WATER_CCO__45__IN" stoichiometry="1"/> <speciesReference species="ATP_CCO__45__IN" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="PROTON_CCO__45__OUT" stoichiometry="4"/> <speciesReference species="Pi_CCO__45__IN" stoichiometry="1"/> <speciesReference species="ADP_CCO__45__IN" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="_3__46__6__46__4__46__9__45__RXN" name="3.6.4.9-RXN" reversible="true"> <listOfReactants> <speciesReference species="WATER" stoichiometry="1"/> <speciesReference species="ATP" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="PROTON" stoichiometry="1"/> <speciesReference species="Pi" stoichiometry="1"/> <speciesReference species="ADP" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="_3__46__6__46__4__46__6__45__RXN" name="3.6.4.6-RXN" reversible="true"> <listOfReactants> <speciesReference species="WATER" stoichiometry="1"/> <speciesReference species="ATP" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="PROTON" stoichiometry="1"/> <speciesReference species="Pi" stoichiometry="1"/> <speciesReference species="ADP" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="_3__46__6__46__4__46__4__45__RXN" name="3.6.4.4-RXN" reversible="true"> <listOfReactants> <speciesReference species="WATER" stoichiometry="1"/> <speciesReference species="ATP" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="PROTON" stoichiometry="1"/> <speciesReference species="Pi" stoichiometry="1"/> <speciesReference species="ADP" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="RXN__45__11109" name="RXN-11109" reversible="true"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1"/> <speciesReference species="WATER" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="PROTON" stoichiometry="1"/> <speciesReference species="ADP" stoichiometry="1"/> <speciesReference species="Pi" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="RXN__45__11135" name="RXN-11135" reversible="true"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1"/> <speciesReference species="WATER" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="PROTON" stoichiometry="1"/> <speciesReference species="ADP" stoichiometry="1"/> <speciesReference species="Pi" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="RXN0__45__1061" name="RXN0-1061" reversible="true"> <listOfReactants> <speciesReference species="ATP" stoichiometry="1"/> <speciesReference species="WATER" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="PROTON" stoichiometry="1"/> <speciesReference species="ADP" stoichiometry="1"/> <speciesReference species="Pi" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="FUMARYLACETOACETASE__45__RXN" name="FUMARYLACETOACETASE-RXN" reversible="true"> <listOfReactants> <speciesReference species="WATER" stoichiometry="1"/> <speciesReference species="_4__45__FUMARYL__45__ACETOACETATE" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="PROTON" stoichiometry="1"/> <speciesReference species="FUM" stoichiometry="1"/> <speciesReference species="_3__45__KETOBUTYRATE" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="ALKYLHALIDASE__45__RXN" name="ALKYLHALIDASE-RXN" reversible="true"> <listOfReactants> <speciesReference species="WATER" stoichiometry="1"/> <speciesReference species="CPD__45__614" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="PROTON" stoichiometry="2"/> <speciesReference species="BR__45__" stoichiometry="1"/> <speciesReference species="CL__45__" stoichiometry="1"/> <speciesReference species="FORMALDEHYDE" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="DHLAXANAU__45__RXN" name="DHLAXANAU-RXN" reversible="true"> <listOfReactants> <speciesReference species="_12__45__DICHLOROETHANE" stoichiometry="1"/> <speciesReference species="WATER" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="_2__45__CHLOROETHANOL" stoichiometry="1"/> <speciesReference species="CL__45__" stoichiometry="1"/> <speciesReference species="PROTON" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="HALOALKANE__45__DEHALOGENASE__45__RXN" name="HALOALKANE-DEHALOGENASE-RXN" reversible="true"> <listOfReactants> <speciesReference species="WATER" stoichiometry="1"/> <speciesReference species="_1__45__Haloalkanes" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="Primary__45__Alcohols" stoichiometry="1"/> <speciesReference species="Halides" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="ORNDECARBOX__45__RXN" name="ORNDECARBOX-RXN" reversible="false"> <listOfReactants> <speciesReference species="PROTON" stoichiometry="1"/> <speciesReference species="L__45__ORNITHINE" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="CARBON__45__DIOXIDE" stoichiometry="1"/> <speciesReference species="PUTRESCINE" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="PYRUVATE__45__DECARBOXYLASE__45__RXN" name="PYRUVATE-DECARBOXYLASE-RXN" reversible="true"> <listOfReactants> <speciesReference species="_2__45__Oxo__45__carboxylates" stoichiometry="1"/> <speciesReference species="PROTON" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="CARBON__45__DIOXIDE" stoichiometry="1"/> <speciesReference species="Aldehydes" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="RXN__45__6161" name="RXN-6161" reversible="false"> <listOfReactants> <speciesReference species="PROTON" stoichiometry="1"/> <speciesReference species="PYRUVATE" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="ACETALD" stoichiometry="1"/> <speciesReference species="CARBON__45__DIOXIDE" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="PEPCARBOXYKIN__45__RXN" name="PEPCARBOXYKIN-RXN" reversible="false"> <listOfReactants> <speciesReference species="OXALACETIC_ACID" stoichiometry="1"/> <speciesReference species="ATP" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="CARBON__45__DIOXIDE" stoichiometry="1"/> <speciesReference species="PHOSPHO__45__ENOL__45__PYRUVATE" stoichiometry="1"/> <speciesReference species="ADP" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="AIRCARBOXY__45__RXN" name="AIRCARBOXY-RXN" reversible="false"> <listOfReactants> <speciesReference species="_5__45__PHOSPHORIBOSYL__45__5__45__AMINOIMIDAZOLE" stoichiometry="1"/> <speciesReference species="CARBON__45__DIOXIDE" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="PROTON" stoichiometry="2"/> <speciesReference species="PHOSPHORIBOSYL__45__CARBOXY__45__AMINOIMIDAZOLE" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="RXN__45__8642" name="RXN-8642" reversible="false"> <listOfReactants> <speciesReference species="OXALO__45__SUCCINATE" stoichiometry="1"/> <speciesReference species="PROTON" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="_2__45__KETOGLUTARATE" stoichiometry="1"/> <speciesReference species="CARBON__45__DIOXIDE" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="UROGENDECARBOX__45__RXN" name="UROGENDECARBOX-RXN" reversible="false"> 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<speciesReference species="Pi" stoichiometry="1"/> <speciesReference species="CARBAMOYL__45__P" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="_6__46__3__46__5__46__6__45__RXN" name="6.3.5.6-RXN" reversible="true"> <listOfReactants> <speciesReference species="GLN" stoichiometry="1"/> <speciesReference species="L__45__aspartyl__45__tRNAAsn" stoichiometry="1"/> <speciesReference species="ATP" stoichiometry="1"/> <speciesReference species="WATER" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="GLT" stoichiometry="1"/> <speciesReference species="Charged__45__ASN__45__tRNAs" stoichiometry="1"/> <speciesReference species="Pi" stoichiometry="1"/> <speciesReference species="ADP" stoichiometry="1"/> <speciesReference species="PROTON" stoichiometry="2"/> </listOfProducts> </reaction> <reaction id="_6__46__3__46__5__46__7__45__RXN" name="6.3.5.7-RXN" reversible="false"> <listOfReactants> <speciesReference species="GLN" stoichiometry="1"/> 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</listOfProducts> </reaction> <reaction id="RXN0__45__5419" name="RXN0-5419" reversible="true"> <listOfReactants> <speciesReference species="Nonmethylated__45__Ribosomal__45__Protein__45__L11s" stoichiometry="1"/> <speciesReference species="S__45__ADENOSYLMETHIONINE" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="Methylated__45__Ribosomal__45__Protein__45__L11s" stoichiometry="1"/> <speciesReference species="ADENOSYL__45__HOMO__45__CYS" stoichiometry="1"/> </listOfProducts> </reaction> <reaction id="RXN__45__8391" name="RXN-8391" reversible="true"> <listOfReactants> <speciesReference species="Delta4__45__hexadecenoyl__45__ACPs" stoichiometry="1"/> <speciesReference species="MALONYL__45__ACP" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference species="_3__45__oxo__45__petroselinoyl__45__ACPs" stoichiometry="1"/> <speciesReference species="ACP" stoichiometry="1"/> <speciesReference species="CARBON__45__DIOXIDE" 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