Mercurial > repos > genouest > miranda2asko
changeset 1:605bb64c2668 draft default tip
planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/miranda2asko commit dea4b3dfc2393e4f5b9945099cfec37afe471283
| author | genouest |
|---|---|
| date | Wed, 18 Apr 2018 06:26:33 -0400 |
| parents | 3f6cdc878f35 |
| children | |
| files | miranda2asko.pl miranda2asko.xml test-data/mature.fa test-data/miranda.asko.out test-data/mirna.asko.tsv test-data/target.asko.tsv |
| diffstat | 6 files changed, 2123 insertions(+), 1012 deletions(-) [+] |
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--- a/miranda2asko.pl Thu Apr 12 10:53:04 2018 -0400 +++ b/miranda2asko.pl Wed Apr 18 06:26:33 2018 -0400 @@ -1,10 +1,39 @@ use strict; use warnings; +use Getopt::Long; -my $miranda=shift; +my $miranda; +my $mature; + +GetOptions ("miranda=s" => \$miranda, + "mature=s" => \$mature); + + +open MAT, $mature or die "failed to open $mature\n"; +open OUT_MIR, ">mirna.asko.tsv" or die "failed to open mirna.asko.tsv"; +my $mirna=""; +my $mirna_seq=""; +my $start=1; +print OUT_MIR "mirna\tseq\n"; +while (<MAT>) { + chomp; + if (/^>(\S+)/) { + unless ($start==1) { + print OUT_MIR $mirna, "\t", $mirna_seq, "\n"; + } + $start=0; + $mirna=$1; + $mirna_seq=""; + next; + } + $mirna_seq.=$_; +} +print OUT_MIR $mirna, "\t", $mirna_seq, "\n"; + + open MIRANDA, $miranda or die "failed to open $miranda\n"; - -print "mirna\ttargets\@mRNA\tscore\tenergy\talignment length\tglobal coverage\tseed coverage\n"; +open TARGET, ">target.asko.tsv" or die "failed to open target.asko.tsv\n"; +print TARGET "target\ttargets\@mirna\ttargets\@mRNA\tscore\tenergy\talignment length\tglobal coverage\tseed coverage\n"; while (<MIRANDA>) { chomp; @@ -13,5 +42,5 @@ $target=~s/_UTR3$//; $glcov=~ s/\%$//; $seedcov=~ s/\%$//; - print join ("\t", $mirna, $target, $score, $energy,$alnlength, $glcov, $seedcov), "\n"; + print TARGET join ("\t", $mirna.'.'.$target, $mirna, $target, $score, $energy,$alnlength, $glcov, $seedcov), "\n"; }
--- a/miranda2asko.xml Thu Apr 12 10:53:04 2018 -0400 +++ b/miranda2asko.xml Wed Apr 18 06:26:33 2018 -0400 @@ -1,30 +1,34 @@ -<tool id="miranda2asko" name="Convert miRanda output to tabular" version="0.1"> +<tool id="miranda2asko" name="Convert miRanda output to tabular" version="0.2"> <description>for AskOmics</description> <requirements> <requirement type="package" version="5.22.2.1">perl</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ - perl '$__tool_directory__/miranda2asko.pl' '${miranda}' > '${mirasko}' + perl '$__tool_directory__/miranda2asko.pl' -miranda '${miranda}' -mature '${mature}' ]]></command> <inputs> - <param format="tsv" name="miranda" type="data" label="miRanda output" /> + <param format="tsv,tabular" name="miranda" type="data" label="miRanda output" /> + <param format="fasta" name="mature" type="data" label="mature fasta file" /> </inputs> <outputs> - <data format="tsv" name="mirasko" label="${tool.name} on ${on_string} : AskOmics miRanda output" /> + <data name="targets" format="tabular" from_work_dir="target.asko.tsv" label="${tool.name} on ${on_string}: targets in Askomics format"/> + <data name="mirna" format="tabular" from_work_dir="mirna.asko.tsv" label="${tool.name} on ${on_string}: mirna in Askomics format"/> </outputs> <tests> <test> - <param name="miranda" ftype="tsv" value="miranda.out" /> - <output name="mirasko" ftype="tsv" file="miranda.asko.out" compare="sim_size" /> + <param name="miranda" ftype="tabular" value="miranda.out" /> + <param name="mature" ftype="fasta" value="mature.fa" /> + <output name="targets" ftype="tabular" file="target.asko.tsv" compare="sim_size" /> + <output name="mirna" ftype="tabular" file="mirna.asko.tsv" compare="sim_size" /> </test> </tests> <help> - Generates a TSV compliant to AskOmics from the miRanda output. + Generates TSV files compliant to AskOmics from the miRanda output. </help> <citations>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/mature.fa Wed Apr 18 06:26:33 2018 -0400 @@ -0,0 +1,718 @@ +>api-miR-3015c +AACCAGATGTTGTAAGAACGA +>api-miR-279a +TGACTAGATCCACACTCATCC +>api-miR-3045a +CAGAATAAGGGCACACTAGATTAACG +>api-miR-3021 +TTGTCTTGTGTAGTCCATGATAGCATC +>api-miR-71 +TGAAAGACATGGGTAGTGAGATG +>api-miR-3041 +TTAAAGCTTTGATGACGGGATA +>api-miR-3038 +TGGGGTTTCAATAGGCATTTACC +>api-miR-3053 +CCACGGTTGAATAAGGTACCATA +>api-miR-219 +TGATTGTCCAAACGCAATTCTTG +>api-miR-252b +CTAAGTAGTAGCGCCAACGGTGA +>api-miR-3056 +TAAGACATTATCTGAAGATTTC +>api-miR-3030 +AGGTAACAGGTTTGTTTTGTGA +>api-miR-3017a +CGGTCTGTCGCAGAACACGGCA +>api-miR-3033 +TCCACGGACATCCATTTTTGTGA +>api-miR-3032 +TGTTAGTATAACTCTTAGTAACA +>api-miR-3028 +TACGGTTTAGACTATTCATTTT +>api-miR-3023 +AAGCTTGATTTCAGAAATGTCGA +>api-miR-184a +TGGACGGAGAACTGATAAGGGC +>api-miR-29 +TAGCACCATTTGAAACCAGT +>api-miR-7 +TGGAAGACTAGTGATTTTGTTGTT +>api-miR-3040 +CAGCCGGTGGTGACTGTTTCCACA +>api-miR-137 +TATTGCTTGAGAATACACGTAG +>api-miR-998 +TAGCACCATGGAATTCAGCTG +>api-miR-306 +TCAGGTACCAAGTGATTTCTGA +>api-miR-3027 +CCAGTCTTGCATTTATTCCACT +>api-miR-275 +TCAGGTACCTGAAGTAGCGCG +>api-miR-3015a +TTACTGGACATTGTAAGAACGG +>api-miR-3042 +GAGGGCAGATTATTTCTGATAC +>api-miR-3026 +TCGGCGTAACATGATGTGTGCG +>api-miR-92a +TATTGCACATGTCCCGGCCAAT +>api-miR-124 +TAAGGCACGCGGTGAATGCCA +>api-miR-981 +TTCGTTGTCGATGAAACCTTGA +>api-miR-8 +TAATACTGTCAGGTAATGATGTC +>api-miR-276 +TAGGAACTTCATACCGTGCTCT +>api-miR-281 +TGTCATGGAGTTGCTCTCTTT +>api-miR-929 +AAATTGACTCTAGTAGGGAG +>api-miR-184b +TGGACGGAGAACTGATAAAGGA +>api-miR-278 +TCGGTGGGACTTTCGTTCGTTT +>api-miR-2a +TATCACAGCCAGCTTTGATGAGCG +>api-miR-2b +TATCACAGCCAGCTTTGTATGAGCA +>api-miR-277 +TAAATGCACTATCTGGTACGACA +>api-let-7 +TGAGGTAGTTGGTTGTATAGT +>api-miR-3046 +TTATAGATAATACAAGCATAT +>api-miR-3015b +CCGGACATTGTGAGAACGGCTC +>api-miR-3039 +AAAAACGTCAAAACACGGTGG +>api-miR-3022 +TCTCGTTATATCTGACGTCGGGGAA +>api-miR-9a +TCTTTGGTTATCTAGCTGTATGA +>api-miR-279b +TGACTAGATCTACACTCATCA +>api-miR-971 +TTGGTGTTCAACCTTACAGTGAG +>api-miR-317 +TGAACACAGCTGGTGGTATCT +>api-miR-3051 +AAGGAACGTTAAAAACCATTGT +>api-miR-315 +TTTTGATTGTTGCTCAGAAAGCC +>api-miR-14 +TCAGTCTTTTTCTCTCTCCTAT +>api-bantam +TGAGATCATTGTGAAAGCTAATT +>api-miR-3037 +TTACAAAACATTCAGAATTTTG +>api-miR-3049 +TCGGGAAGGCAGCTGCGGCGGACT +>api-miR-3034 +TGCAACTGTACAATGACAATAGTAGGA +>api-miR-87a +GTGAGCAAAGTTTCAGGTGTGC +>api-miR-3043 +CACATTAAGGACTCATATTGGAG +>api-miR-3044 +TGAATTCTTATGTGAGCTTTGC +>api-miR-3050 +TGAGATCTTGATAAACTCGCCT +>api-miR-3035 +TTACTGGTCATCGTCTTAACTT +>api-miR-3024 +TCTTTGGGATTTAATAGAGCCGGT +>api-miR-263b +CTTGGCACTGGAAGAATTCACAGA +>api-miR-993 +GAAGCTCGTCTCTACAGGTATCT +>api-miR-190 +AGATATGTTTGATATTCTTGGTTG +>api-miR-3036 +ATTGGTTTCTAGATCTCAGCA +>api-miR-13a +TATCACAGCCACTTTGATGAGC +>api-miR-1000 +ATATTGTCCTGTCACAGCAGTA +>api-miR-1 +TGGAATGTAAAGAAGTATGGAG +>api-miR-92b +TATTGCACTTGACCCAGCCTGC +>api-miR-3045b +GCCTGGTGTGCTCTTATTCTGAA +>api-miR-316 +TGTCTTTTTCCGCTTTGCTGCCG +>api-miR-2765 +TGGTAACTCCAAACCATTGCCGG +>api-miR-996 +TGACTAGAGTTACACTCGTCA +>api-miR-2796 +GTAGGCCGGCGGAAACTACTAG +>api-miR-1923 +AATCGCGTACCGTTGCACAGTCGTGGC +>api-miR-34 +TGGCAGTGTGATTAGCTGGTT +>api-miR-3017b +CGGTCTGTCACGGAACACGGGA +>api-miR-252a +CTAAGTACTAGTGCCGCGGGAG +>api-miR-210 +TTGTGCGTGTGACATCGGCTA +>api-miR-3019 +TACTGACTTTCTAATTGATTTA +>api-miR-9b +TCTTTGGTACTTTAGCTGTAG +>api-miR-3054 +TTAGTGGATTCGCCTGTTGACACCGGC +>api-miR-3029 +AAAGACGTAAATGTTACCTGCG +>api-miR-100 +GACCCGTAGATCCGAACTTGTG +>api-miR-927 +TTTAGAATTCCTACGCTTTACC +>api-miR-3047 +CAAAACATTCAAAACTCCCTAC +>api-miR-2c +CCGTCAAAGCGGGCTGTCGTA +>api-miR-965 +TAAGCGTATAGCTTTTCCCCTT +>api-miR-3016 +ATTGGTAACACATACGTCTTTAG +>api-miR-iab-4 +ACGTATACTAAATGTATCCTGA +>api-miR-10 +ACCCTGTAGATCCGAATTTGT +>api-miR-263a +AATGGCACTGAAAGAATTCACGGG +>api-miR-3018 +AAAGAATAGAAAATCGAAGGTG +>api-miR-307 +CCACAACCTCCTTGAGTGAGCGA +>api-miR-3020 +GTAAGAATAATGATCCATTAGA +>api-miR-3031 +TTGCTTTTTAACAAGTTTCACTA +>api-miR-3055 +GCAGTTCGCGATAAGCGGCCG +>api-miR-3052 +TGCATTCTTTGAGCTTAGCATGATGGCT +>api-miR-3025 +AGTAGTAAGAGATCAGTTGGATA +>api-miR-3048 +TGTGAACTGGTCATGCTCTTAA +>api-miR-87b +GTGAGCAAAGTTTCAGGCGTGT +>GL349742_15837 +TATCACAGCCGTTTTTGACAATT +>GL355572_46131 +TCAGTATGTGTCCTTGAATGTG +>GL349872_24254 +ACCCGTTTTCATGAGCGTACTG +>GL349650_6646 +TCAGTATGTGTCCTTGAATGTG +>GL349650_6640 +TCAGTATGTGTCCTTGAATGTG +>GL349650_6638 +TCAGTATGTGTCCTTGAATGTG +>GL349650_6636 +TCAGTATGTGTCCTTGAATGTG +>GL350468_38246 +TTTGTTCGTTCGGCTCGAGTCA +>GL350757_41318 +CTACTTGATGAAAAATATCCT +>GL350757_41320 +CTACTTGATGAAAAATATCCT +>GL350757_41324 +CTACTTGATGAAAAATATCCT +>GL349642_4945 +TCCAAGGACGTCCATTTGACTGT +>GL349642_4963 +TCCAAGGACGTCCATTTGACTGT +>GL349642_4959 +TCCAAGGACGTCCATTTGACTGT +>GL350757_41328 +CTACTTGATGAAAAATATCCT +>GL350222_34242 +ATTGTACTTCATCAGGTGC +>GL350757_41322 +CTACTTGATGAAAAATATCCT +>GL350757_41326 +CTACTTGATGAAAAATATCCT +>GL350370_36909 +CATTCAAGGACTCATATTGGA +>GL349714_13728 +ATTAAAATATTATGTTGTACT +>GL349714_13726 +ATTAAAATATTATGTTGTACT +>GL349714_13724 +ATTAAAATATTATGTTGTACT +>GL350343_36473 +TTGCTTTTTAACAAGTTTCGCT +>GL349642_4954 +ACGAGTACGGATGCCCATGAACG +>GL349642_4972 +ACGAGTACGGATGCCCATGAACG +>GL349642_4958 +ACGAGTACGGATGCCCATGAACG +>GL349642_4976 +ACGAGTACGGATGCCCATGAACG +>GL349642_4980 +ACGAGTACGGATGCCCATGAACG +>GL349919_26520 +TAGGATTCGTGAACATGTTTGA +>GL349630_2423 +TCGGTACGTGTCCTTGTATGACT +>GL349630_2421 +TCGGTACGTGTCCTTGTATGACT +>GL349630_2419 +TCGGTACGTGTCCTTGTATGACT +>GL349630_2425 +TCGGTACGTGTCCTTGTATGACT +>GL351656_44870 +TATCACTCTGTTATACTATAAG +>GL349919_26570 +TTTGATATCAGGTTGTAGCTCC +>GL350151_32866 +TAGTAACTCGTGAACATGTTAA +>GL349642_4961 +TTCATGGAAGTCCGTTAACCTGC +>GL349919_26564 +TAGGTACTTAAACTTTAAAAGT +>GL349919_26590 +TAGGTACTTAAACTTTAAAAGT +>GL349919_26542 +TAGGTACTTAAACTTTAAAAGT +>GL349826_21746 +AGGCAAGATGAGGCAAAGCTGT +>GL350151_32872 +TCGACCCGGTCACTAGAAAAAT +>GL349928_26838 +AAGGTAACTAGATCACTATGGGA +>GL350343_36481 +CCACACATTCAATAATTCCTTAC +>GL349642_4947 +TCCAAGGAAGTCCGTTAACCTGC +>GL349642_4955 +TCCAAGGAAGTCCGTTAACCTGC +>GL349642_4951 +TCCAAGGAAGTCCGTTAACCTGC +>GL349642_4965 +TCCAAGGAAGTCCGTTAACCTGC +>GL350737_41242 +CCACTTTGAATTCTTTAACGA +>GL350151_32910 +CCACTTTGAATTCTTTAACGA +>GL349728_14765 +TACTGGAATTGGTGTCTCTACA +>GL349650_6644 +CATTAAAGGACTCATATTGAAG +>GL349650_6642 +CATTAAAGGACTCATATTGAAG +>GL349919_26592 +ATGTCAATCTGTATACCAAAGA +>GL349642_4978 +ACGAGTACGGATTCCCATGAACG +>GL350151_32898 +CGGCATTTCTGTTTTCAATCT +>GL351656_44862 +CGGCATTTCTGTTTTCAATCT +>GL349645_5454 +ACAGTCTTTATTTTCTACGATG +>GL349645_5448 +ACAGTCTTTATTTTCTACGATG +>GL369698_47844 +ACGGGTATACATGTATGTTATC +>GL350151_32915 +ACGGGTATACATGTATGTTATC +>GL350151_32913 +ACGGGTATACATGTATGTTATC +>GL350737_41243 +ACGGGTATACATGTATGTTATC +>GL369698_47842 +ACGGGTATACATGTATGTTATC +>GL349642_4967 +TCCATAGACGTCCATTTACCTGC +>GL366836_47447 +TCCATAGACGTCCATTTACCTGC +>GL350682_40710 +GGTGGCCGAGCGGTTTAAG +>GL366836_47437 +TCCATAGACGTCCATTTACCTGC +>GL350151_32870 +TTTGGTCTCAGTTAGTGGCTCC +>GL349801_20413 +TCTACAACTTTGAGTTAATCACT +>GL349645_5442 +ACAGTCTTTATTTTCTACGACG +>GL349919_26524 +TAAGCCACTTCATACAAACTG +>GL349643_5190 +ACAGTTCGTGATATTCGGCTG +>GL366836_47441 +AGGTGAACGGATGTCCTTGAATG +>GL349642_4969 +AGGTGAACGGATGTCCTTGAATG +>GL366836_47439 +AGGTGAACGGATGTCCTTGAATG +>GL366836_47445 +AGGTGAACGGATGTCCTTGAATG +>GL349645_5440 +ACAGTCTTTATTTTCTACGATT +>GL349645_5452 +ACAGTCTTTATTTTCTACGATT +>GL349645_5438 +ACAGTCTTTATTTTCTACGATT +>GL350151_32862 +TTGTAACTCGTGAACATGTTAA +>GL349634_3209 +TATTAATCTTTAAGGTATTATT +>GL349928_26830 +ATTGGTAACACGTTTCGTCTTTAG +>GL350277_35351 +CACACGATCGCTTCACACTCG +>GL349912_26190 +TGTACCAGGACTTCTATTTATAT +>GL349630_2427 +TCGGTATGTGTCCTCGTATGACT +>GL357043_46322 +TCGGTATGTGTCCTCGTATGACT +>GL349755_17087 +TCGGTATGTGTCCTCGTATGACT +>GL349919_26580 +TAGGTACCTAAACTTTAAAAGT +>GL349645_5431 +TGACTAGAGTTTATACTACCGGT +>GL349642_4982 +ACGAGGACGGATGCCCATGAACG +>GL349642_4974 +ACGAGGACGGATGCCCATGAACG +>GL349643_5188 +GCCCAATATCGCGAAGTGCTA +>GL349643_5204 +GCCCAATATCGCGAAGTGCTA +>GL349643_5194 +GCCCAATATCGCGAAGTGCTA +>GL349643_5208 +GCCCAATATCGCGAAGTGCTA +>GL349643_5200 +GCCCAATATCGCGAAGTGCTA +>GL349643_5182 +GCGGTTCGTGATATTCGGCCG +>GL350503_38763 +ATTAAAATATTATGTTGTATA +>GL349645_5433 +CGGCTACCTTAGATCCAAGAC +>GL351656_44865 +ATGGGATGAAAGCATTGTATCT +>GL349759_17778 +TTTTCTTGTCTGGGTGTTGTAGT +>GL349640_4529 +TGGTACATTGTTTTATATTTCTT +>GL350151_32875 +AGAGTAGTAATTTTTGGTCTGTG +>GL350151_32890 +TGCCACTTTGAATTCTGTAACGA +>GL349654_7296 +TTCTCCACTTCTTAATGGCTG +>GL350387_37119 +TTCTCCACTCCTTATTGGCTG +>GL350072_31218 +AATCGGTGGCGTGAACCAGTGCT +>GL367407_47522 +AATCGGTGGCGTGAACCAGTGCT +>GL349634_3207 +AATCGGTGGCGTGAACCAGTGCT +>GL367428_47529 +CGTACTGAACCAGAAATACAACT +>GL350151_32881 +AGAGTAGTAATTTTTGGTCTGTG +>GL350359_36742 +TCACCATCGAGATGTATAGACT +>GL350159_32994 +ACTCGCTTTAAATCCATCTTGAA +>GL365936_47352 +TTCTCCACTTCTTAATGGCTG +>GL350173_33281 +TTCTCCACTTCTTAATGGCTG +>GL349651_6856 +ACGACCTTATAGTAGAAACTA +>GL349774_18768 +ACGACCTTATAGTAGAAACTA +>GL349661_8394 +ACGACCTTATAGTAGAAACTA +>GL349660_8237 +TGAGATCATTATAAAACTTTAT +>GL349639_4112 +TTCTCCACTTCTTATTAGCTG +>GL349744_16060 +TGTGTCATATCTTTCTGTTACA +>GL351656_44860 +TACAATTGCGGAATTTTCATAGA +>GL349648_6188 +CTTTTACACTGTTTTGTCTTTCT +>GL350549_39290 +AGGGATTTAGCGGACCAACGGTGG +>GL350151_32856 +TAGGTTTCCGTGAACATGTTAA +>GL349645_5456 +AAGGTAACGTCCAAGTCTCTAG +>GL349645_5450 +AAGGTAACGTCCAAGTCTCTAG +>GL350151_32887 +ATAAAATTCTTTTGTCCTATGA +>GL350737_41239 +ATAAAATTCTTTTGTCCTATGA +>GL349642_4949 +TCCACGGACGTCCGTTTTCCTGC +>GL366836_47443 +TCCACGGACGTCCGTTTTCCTGC +>GL349755_17085 +TCGGTATGTGTTCTTGTATGGC +>GL360583_46764 +TCGGTATGTGTTCTTGTATGGC +>GL349755_17081 +TCGGTATGTGTTCTTGTATGGC +>GL349928_26823 +CTTGGGTCAGAACAATATTATT +>GL350051_30843 +TCACAAAGAACTCATAATGAAG +>GL349755_17091 +TAGTGTGTGTCCTTGTATGACT +>GL350150_32832 +CTCATTTAGTCAAATCCAAAGT +>GL349919_26522 +TTGCCCAAAATATACAACCATC +>GL349745_16220 +TTGGTTTGAACTCTCATATTGAT +>GL364454_47177 +TGAGTGTGATATTATGGTTCTTG +>GL349919_26514 +TTGCCCAAAATATACAACCATC +>GL349919_26547 +TTTTAAAGTTTTGGTATGTTATGT +>GL364454_47174 +TTGCCCAAAATATACAACCATC +>GL349919_26529 +TTTTAAAGTTTTGGTATGTTATGT +>GL350151_32894 +CATGAAGTTTCTCTATTGGGTATC +>GL350151_32878 +CATGAAGTTTCTCTATTGGGTATC +>GL351656_44874 +CATGAAGTTTCTCTATTGGGTATC +>GL350225_34332 +TTAATTTCTTTTGACTTACAGG +>GL350584_39655 +TGAGATCATTATAATACTTTAT +>GL349660_8245 +TGAGATCATTATAATACTTTAT +>GL350151_32885 +TGATGGTCATATTATGGTCATTG +>GL350151_32864 +ATTGGAATTCGTTAACATGCTTG +>GL350011_29531 +AATCGTGACCAGGATGTTTGAACC +>GL349660_8242 +AAAGTATTGTTTTGGTCTTATT +>GL349660_8235 +TGAGATCATTATAATACTTTAT +>GL350151_32911 +TTGAGCTCTTGTCAATATTATG +>GL349660_8244 +TCAGTCTTATATTTCTCACTTT +>GL350151_32860 +ATTGGAATTCGTTAACATGCTTG +>GL349660_8239 +TGAGATCATTATAACACTTTAT +>GL349645_5436 +TAGTGGAAAATTTAGACTTTAG +>GL349919_26546 +TATCTTGCTTAACTTTAAAAGT +>GL349919_26534 +TATCTTGCTTAACTTTAAAAGT +>GL349678_10254 +CACGGACGTATCACCGAGGCGGCG +>GL349637_3676 +CACCGTGAAACTATTTTAAACT +>GL351656_44863 +TGATGGTCATATTATGGTCATTG +>GL349919_26535 +TTTTAAAGTTTTCGTATTATATG +>GL349919_26573 +TTTTAAAGTTTTCGTATTATATG +>GL365736_47329 +TTTTAAAGTTTTCGTATTATATG +>GL350151_32900 +TGATAGTCATATTATGGTCATTG +>GL349897_25528 +TCTTTGGTTTTAAAGTAGCCGT +>GL350584_39652 +TCAGTCTTATATTTCTCACTTT +>GL350804_41763 +GTAATCCGTTTAGACGTCGCAGT +>GL349633_2878 +CAAATTTATGTTGAGCAGTTGA +>GL349928_26839 +TCACTGGTGACAATTCATGAAG +>GL349919_26556 +TCTGTTCTTATACTACTTTCCA +>GL349919_26550 +TCTGTTCTTATACTACTTTCCA +>GL357479_46406 +GCCTGTATTTGTCCGCTGGTG +>GL350151_32902 +TTGGCCATAATATACACTCTCT +>GL349935_27002 +ATGCTCTCGAATTATCTAGGGA +>GL349919_26554 +TACCTACCTTAACTTTAAAAGT +>GL350396_37175 +TATATTTAATATGATGTGGGCG +>GL373398_48269 +TATATTTAATATGATGTGGGCG +>GL349919_26528 +AAAAATAATTTAAACTTTCTGT +>GL349652_7061 +CGCCGGTGATTGTTTTCGGA +>GL349665_8703 +ATCGACGCGTACGAACGGCGCC +>GL349862_23755 +CGCCATCCGCGTCCCGGC +>GL349745_16094 +TCTGTGACTGACTCGGATGGCGCC +>GL351286_44212 +TTATATCTCGAGACTTAGAACACT +>GL349895_25394 +TTACGTATACTGAAGGTATA +>GL349681_10700 +CGTGCCTGGACGTCACTCTGAC +>GL350607_39936 +CTTCCTTCGTCGTCGTCGTCGA +>GL349773_18685 +CCGCGGCTGGCTTGGACACCG +>GL349624_956 +TTTGATCCTCATTAGAAACCT +>GL350677_40695 +CGTTCGCCCGTCGCCGGC +>GL349744_16062 +TTATCGTCTTCACTTGGTCGCT +>GL349745_16238 +TTTGACCTCCGTTTGCGTGCAT +>GL349911_26176 +TTTACCCAATATATGGCTATAT +>GL350550_39307 +AACCGGCAATTGTAAGAACAGC +>GL350344_36516 +TGGTGTTTCTTATTCGGAATG +>GL351656_44868 +AATGGCAACAGCTGGAGTGC +>GL367428_47527 +CATGGGCGGCGCTAGGGATTGA +>GL349919_26584 +TATGGAGCTGTATGCCATATT +>GL349621_14 +TTTATTCGGGTTTTGGGTGC +>GL360975_46812 +CATGGGCGGCGCTAGGGATTGA +>GL349912_26187 +TTAGAATATCCTCGCTTTTATAGA +>GL350396_37173 +TATATTTAATATGATGTGGACG +>GL349688_11446 +ATATTGGTATCCGGTTGACTGTC +>GL350223_34252 +ATCCGGCTCGAAGGACCA +>GL349641_4750 +TTGTTGTTATCGTCATTTCGA +>GL373398_48267 +TATATTTAATATGATGTGGACG +>GL349773_18697 +TCTTTGGTATTCTAGCTGTAGG +>GL349643_5180 +GCAGTTCGTGATATTCGGCCG +>GL349679_10332 +CCCGGATACTTGTATTTTTACTG +>GL350229_34377 +CGGGTGCTTCTTATTTGGAACA +>GL350396_37171 +TATATTTAATATGATGTGGACG +>GL349935_26988 +CAAGAATATAAAACAATGTACT +>GL349919_26565 +AATGACAACAGTTGGCAGCC +>GL349829_21990 +AGAAAAAAAGCAGTGTACTG +>GL349919_26539 +ATTTTGGTAGTTTGATAGCT +>GL349697_12321 +AGAAAAAAAGCAGTGTACTG +>GL349919_26587 +ATTTTGGTAGTTTGATAGCT +>GL349919_26577 +ATTTTGGTAGTTTGATAGC +>GL349645_5444 +AAGGTAACGTTCAAGTCTCTAG +>GL349734_15208 +TTTGTGTGACAAAAACTCCGGGGA +>GL370083_47873 +CTTTGAACGCGAGCATTAACAGA +>GL349823_21651 +TTTTAAATACCCATAACTTGCT +>GL349920_26641 +TTTATGTGTCACAAAAGACATG +>GL349935_26989 +TGTGAGGAAGAGGCTGCCT +>GL350151_32906 +CGGCATTTCTGTTTTCAATCT +>GL349919_26526 +TTTGGTTTCAGGATTTAGATC +>GL350463_38159 +AGGAAATCAGTATGGCTTTTAG +>GL349806_20754 +AAAGTTGACTGTATAGCAATGT +>GL353821_45854 +CCCTGAATACTGGTCGCA +>GL349919_26532 +AATGAATTCAGAAATGTTGTCC +>GL349959_27749 +ATTGATATCACGACGATA +>GL349887_25094 +ATTTGCTTGAATTTCCCGGGGA +>GL350623_40094 +TATAAAATACTCATAGCTCGGT +>GL349870_24134 +AACCACGCTCTGCTACCA +>GL349789_19705 +TGACGGTTTTAAATATTC +>GL351629_44800 +TTATATTGGTGATTTAGT +>GL350034_30305 +ATGCGTGTGTAGTAAGTGACCA +>GL349948_27468 +TAAGCGCCGGCAGGCAGACGG +>GL349950_27537 +CACAAGAATAATGCACGTATTTTT +>GL349660_8233 +TGAGATCATTATAACACTTTAT +>GL349765_18133 +GTTTGGGATCCGAATGGAAAC +>GL350151_32903 +TGTGAATTGAACTATTAACAAA +>GL350137_32552 +TTGGCGGTCCGTCGTGTCGG +>GL350151_32892 +ATATCACTCTGTATAGGTACC +>GL349703_12985 +TATTTGTGTGTTCTGTAGTCT +>GL349753_16977 +TTGGTGTTATTTATTACGGGAC +>GL349798_20257 +AAGAACCTGAGTTTCCTCGTGA +>GL349715_13756 +AATAGTAACTGATTCATTT +>GL349919_26544 +AATGACAACAGTTGGCAGCC +>GL349772_18677 +AATAGTAACTGATTCATT
--- a/test-data/miranda.asko.out Thu Apr 12 10:53:04 2018 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,1001 +0,0 @@ -mirna targets@mRNA score energy alignment length global coverage seed coverage -api-miR-3015c rna27318 146.00 -13.54 17 64.71 88.24 -api-miR-3015c rna14037 141.00 -16.27 16 68.75 81.25 -api-miR-3015c rna15090 140.00 -11.77 15 66.67 86.67 -api-miR-3015c rna25490 145.00 -12.86 18 66.67 88.89 -api-miR-3015c rna23800 163.00 -15.96 18 72.22 83.33 -api-miR-3015c rna28874 141.00 -13.48 15 80.00 86.67 -api-miR-3015c rna5471 145.00 -17.38 18 72.22 83.33 -api-miR-3015c rna16140 142.00 -15.04 17 64.71 82.35 -api-miR-3015c rna16105 141.00 -16.02 17 70.59 88.24 -api-miR-3015c rna142 150.00 -17.80 17 70.59 88.24 -api-miR-3015c rna28003 146.00 -11.43 15 73.33 80.00 -api-miR-3015c rna6629 140.00 -11.26 17 70.59 82.35 -api-miR-3015c rna31159 154.00 -15.85 17 76.47 88.24 -api-miR-3015c rna7103 154.00 -14.69 19 73.68 73.68 -api-miR-3015c rna27233 161.00 -13.68 16 81.25 81.25 -api-miR-3015c rna25366 143.00 -11.32 18 66.67 77.78 -api-miR-3015c rna13454 144.00 -11.74 17 70.59 88.24 -api-miR-3015c rna16129 140.00 -11.44 7 100.00 100.00 -api-miR-3015c rna21816 155.00 -16.34 18 77.78 83.33 -api-miR-3015c rna1484 150.00 -13.99 17 76.47 82.35 -api-miR-3015c rna9925 156.00 -15.91 17 82.35 94.12 -api-miR-3015c rna22538 142.00 -16.96 16 68.75 87.50 -api-miR-3015c rna10626 143.00 -11.27 14 71.43 92.86 -api-miR-3015c rna8007 141.00 -10.21 16 68.75 81.25 -api-miR-3015c rna13271 156.00 -13.56 17 76.47 82.35 -api-miR-3015c rna19614 150.00 -15.29 9 100.00 100.00 -api-miR-3015c rna7395 146.00 -12.72 17 64.71 88.24 -api-miR-3015c rna24477 140.00 -12.34 15 66.67 86.67 -api-miR-3015c rna21283 169.00 -16.42 18 83.33 88.89 -api-miR-3015c rna18527 151.00 -13.33 17 70.59 82.35 -api-miR-3015c rna3409 148.00 -13.28 17 76.47 88.24 -api-miR-3015c rna22964 143.00 -13.51 18 61.11 83.33 -api-miR-3015c rna15636 141.00 -14.21 18 66.67 83.33 -api-miR-3015c rna15636 141.00 -12.11 20 65.00 80.00 -api-miR-3015c rna18504 151.00 -13.33 17 70.59 82.35 -api-miR-3015c rna8921 157.00 -15.36 12 91.67 91.67 -api-miR-3015c rna10851 147.00 -12.83 14 78.57 92.86 -api-miR-3015c rna15581 147.00 -11.38 14 78.57 92.86 -api-miR-3015c rna11089 151.00 -18.87 16 81.25 93.75 -api-miR-3015c rna19278 144.00 -11.18 13 76.92 84.62 -api-miR-3015c rna7087 157.00 -13.96 18 72.22 83.33 -api-miR-3015c rna23299 142.00 -10.62 17 76.47 88.24 -api-miR-3015c rna14645 145.00 -11.11 16 68.75 87.50 -api-miR-3015c rna19270 140.00 -15.57 14 78.57 85.71 -api-miR-3015c rna69 148.00 -14.46 13 76.92 92.31 -api-miR-3015c rna3686 170.00 -24.54 17 88.24 100.00 -api-miR-3015c rna2350 143.00 -14.11 16 75.00 87.50 -api-miR-3015c rna4825 146.00 -9.09 17 70.59 82.35 -api-miR-3015c rna4825 140.00 -10.23 7 100.00 100.00 -api-miR-3015c rna22288 151.00 -19.87 17 76.47 88.24 -api-miR-3015c rna17118 157.00 -16.53 18 72.22 83.33 -api-miR-3015c rna18729 145.00 -12.23 16 68.75 87.50 -api-miR-3015c rna17281 142.00 -9.46 17 64.71 82.35 -api-miR-3015c rna28869 142.00 -14.75 15 73.33 93.33 -api-miR-3015c rna17162 140.00 -11.21 19 73.68 78.95 -api-miR-3015c rna30664 146.00 -13.33 17 64.71 88.24 -api-miR-3015c rna26576 161.00 -15.86 19 73.68 84.21 -api-miR-3015c rna26576 147.00 -16.61 16 81.25 87.50 -api-miR-3015c rna4495 140.00 -13.37 17 70.59 82.35 -api-miR-3015c rna3554 143.00 -25.61 18 83.33 94.44 -api-miR-3015c rna664 168.00 -18.83 17 88.24 88.24 -api-miR-3015c rna5675 150.00 -15.84 18 72.22 77.78 -api-miR-3015c rna28029 154.00 -13.63 17 70.59 94.12 -api-miR-3015c rna5749 140.00 -13.33 11 81.82 100.00 -api-miR-3015c rna6758 162.00 -13.43 17 76.47 82.35 -api-miR-3015c rna3547 141.00 -11.77 14 78.57 92.86 -api-miR-3015c rna7883 146.00 -16.70 20 70.00 80.00 -api-miR-3015c rna11700 156.00 -15.85 17 70.59 88.24 -api-miR-3015c rna24912 175.00 -20.91 18 83.33 88.89 -api-miR-3015c rna25062 140.00 -11.00 17 70.59 82.35 -api-miR-3015c rna26735 153.00 -18.27 18 72.22 94.44 -api-miR-3015c rna21064 157.00 -16.73 19 68.42 84.21 -api-miR-3015c rna21064 146.00 -17.62 9 88.89 100.00 -api-miR-3015c rna10220 140.00 -13.36 18 72.22 77.78 -api-miR-3015c rna7295 145.00 -13.76 14 85.71 92.86 -api-miR-3015c rna7078 145.00 -12.18 15 73.33 80.00 -api-miR-3015c rna14742 140.00 -10.69 15 73.33 80.00 -api-miR-3015c rna18523 151.00 -13.33 17 70.59 82.35 -api-miR-3015c rna9012 153.00 -14.51 18 77.78 88.89 -api-miR-3015c rna1016 141.00 -13.83 16 75.00 93.75 -api-miR-3015c rna11446 170.00 -20.86 17 82.35 88.24 -api-miR-3015c rna3394 141.00 -19.50 16 81.25 87.50 -api-miR-3015c rna28055 140.00 -11.16 17 64.71 88.24 -api-miR-3015c rna4731 148.00 -19.37 14 85.71 92.86 -api-miR-3015c rna3576 141.00 -15.50 16 75.00 93.75 -api-miR-3015c rna14524 150.00 -13.55 15 73.33 86.67 -api-miR-3015c rna18513 151.00 -13.33 17 70.59 82.35 -api-miR-3015c rna5299 154.00 -14.05 17 70.59 76.47 -api-miR-3015c rna4994 140.00 -10.54 7 100.00 100.00 -api-miR-3015c rna17829 155.00 -13.01 14 78.57 85.71 -api-miR-3015c rna24943 153.00 -13.45 14 78.57 92.86 -api-miR-3015c rna24942 153.00 -13.45 14 78.57 92.86 -api-miR-3015c rna16418 142.00 -10.32 13 76.92 92.31 -api-miR-3015c rna1011 148.00 -13.79 17 76.47 88.24 -api-miR-3015c rna9333 147.00 -16.55 14 78.57 92.86 -api-miR-3015c rna29804 142.00 -14.99 15 73.33 93.33 -api-miR-3015c rna14754 140.00 -13.16 17 70.59 82.35 -api-miR-3015c rna22677 144.00 -13.25 17 70.59 88.24 -api-miR-3015c rna24955 142.00 -12.40 13 76.92 92.31 -api-miR-3015c rna9159 155.00 -13.52 16 81.25 81.25 -api-miR-3015c rna8940 141.00 -14.60 20 70.00 75.00 -api-miR-3015c rna22391 140.00 -11.96 15 66.67 86.67 -api-miR-3015c rna19349 142.00 -16.73 17 70.59 76.47 -api-miR-3015c rna13695 154.00 -16.64 15 73.33 93.33 -api-miR-3015c rna5676 150.00 -15.84 18 72.22 77.78 -api-miR-3015c rna26791 140.00 -13.47 13 84.62 92.31 -api-miR-3015c rna7546 141.00 -12.41 20 65.00 80.00 -api-miR-3015c rna8309 141.00 -11.89 16 62.50 87.50 -api-miR-3015c rna7150 153.00 -12.75 16 68.75 81.25 -api-miR-3015c rna6288 145.00 -11.78 12 75.00 83.33 -api-miR-3015c rna13129 147.00 -14.78 17 64.71 82.35 -api-miR-3015c rna12975 145.00 -14.03 18 61.11 77.78 -api-miR-3015c rna5614 158.00 -14.47 13 84.62 92.31 -api-miR-3015c rna26117 155.00 -16.75 16 81.25 81.25 -api-miR-3015c rna13457 144.00 -11.74 17 70.59 88.24 -api-miR-3015c rna18986 141.00 -15.48 16 62.50 87.50 -api-miR-3015c rna26388 142.00 -15.10 18 72.22 83.33 -api-miR-3015c rna18214 148.00 -9.95 13 84.62 84.62 -api-miR-3015c rna16101 144.00 -16.16 15 66.67 93.33 -api-miR-3015c rna16101 144.00 -16.16 15 66.67 93.33 -api-miR-3015c rna18507 151.00 -13.33 17 70.59 82.35 -api-miR-3015c rna26146 141.00 -18.98 20 65.00 80.00 -api-miR-3015c rna2037 145.00 -20.62 17 76.47 88.24 -api-miR-3015c rna23620 145.00 -15.55 20 70.00 80.00 -api-miR-3015c rna3206 146.00 -15.23 23 60.87 69.57 -api-miR-3015c rna5680 141.00 -12.69 12 75.00 100.00 -api-miR-3015c rna24913 175.00 -20.91 18 83.33 88.89 -api-miR-3015c rna29079 143.00 -13.12 18 77.78 83.33 -api-miR-3015c rna20454 149.00 -13.21 16 68.75 93.75 -api-miR-3015c rna5343 154.00 -13.77 17 64.71 82.35 -api-miR-3015c rna11412 143.00 -8.62 14 78.57 85.71 -api-miR-3015c rna14723 148.00 -12.46 11 81.82 90.91 -api-miR-3015c rna21098 149.00 -15.91 19 68.42 89.47 -api-miR-3015c rna24923 175.00 -20.91 18 83.33 88.89 -api-miR-3015c rna25960 161.00 -14.14 16 81.25 81.25 -api-miR-3015c rna25960 143.00 -23.48 18 83.33 94.44 -api-miR-3015c rna5723 140.00 -11.33 17 64.71 88.24 -api-miR-3015c rna14878 152.00 -21.16 14 92.86 92.86 -api-miR-3015c rna30950 150.00 -14.22 13 76.92 84.62 -api-miR-3015c rna13647 144.00 -11.44 14 78.57 78.57 -api-miR-3015c rna28143 141.00 -14.56 12 75.00 100.00 -api-miR-3015c rna8344 145.00 -13.83 22 63.64 68.18 -api-miR-3015c rna11859 140.00 -14.92 11 81.82 100.00 -api-miR-3015c rna18535 151.00 -13.33 17 70.59 82.35 -api-miR-3015c rna20459 149.00 -13.21 16 68.75 93.75 -api-miR-3015c rna28257 153.00 -12.52 16 68.75 81.25 -api-miR-3015c rna136 159.00 -15.29 18 66.67 83.33 -api-miR-3015c rna136 146.00 -14.29 17 82.35 88.24 -api-miR-3015c rna25959 161.00 -14.14 16 81.25 81.25 -api-miR-3015c rna25959 143.00 -23.48 18 83.33 94.44 -api-miR-3015c rna26177 161.00 -19.03 12 91.67 100.00 -api-miR-3015c rna19274 140.00 -15.57 14 78.57 85.71 -api-miR-3015c rna15871 141.00 -13.77 20 60.00 90.00 -api-miR-3015c rna22606 149.00 -16.05 18 72.22 88.89 -api-miR-3015c rna28337 140.00 -9.97 17 70.59 82.35 -api-miR-3015c rna25211 142.00 -15.24 16 75.00 81.25 -api-miR-3015c rna13599 141.00 -12.36 8 87.50 100.00 -api-miR-3015c rna71 148.00 -14.46 13 76.92 92.31 -api-miR-3015c rna27236 157.00 -14.12 16 62.50 93.75 -api-miR-3015c rna27236 142.00 -13.38 12 91.67 91.67 -api-miR-3015c rna24377 154.00 -15.26 13 76.92 92.31 -api-miR-3015c rna20502 151.00 -14.66 17 70.59 82.35 -api-miR-3015c rna5693 143.00 -16.88 13 84.62 92.31 -api-miR-3015c rna13269 156.00 -13.56 17 76.47 82.35 -api-miR-3015c rna3205 143.00 -12.79 14 71.43 92.86 -api-miR-3015c rna22966 143.00 -13.51 18 61.11 83.33 -api-miR-3015c rna18530 151.00 -13.33 17 70.59 82.35 -api-miR-3015c rna18497 154.00 -15.85 17 76.47 88.24 -api-miR-3015c rna1258 154.00 -17.08 17 70.59 94.12 -api-miR-3015c rna1258 148.00 -17.06 21 71.43 71.43 -api-miR-3015c rna27979 151.00 -17.61 18 66.67 88.89 -api-miR-3015c rna1230 155.00 -16.04 16 75.00 87.50 -api-miR-3015c rna7299 140.00 -12.24 17 70.59 82.35 -api-miR-3015c rna13115 140.00 -18.65 14 78.57 85.71 -api-miR-3015c rna11383 141.00 -15.92 15 86.67 93.33 -api-miR-3015c rna9697 160.00 -17.95 22 77.27 77.27 -api-miR-3015c rna6484 151.00 -17.36 18 66.67 88.89 -api-miR-3015c rna18046 145.00 -19.22 22 63.64 72.73 -api-miR-3015c rna13218 140.00 -10.95 15 66.67 86.67 -api-miR-3015c rna24095 146.00 -15.84 20 70.00 80.00 -api-miR-3015c rna3397 141.00 -19.50 16 81.25 87.50 -api-miR-3015c rna9926 156.00 -15.91 17 82.35 94.12 -api-miR-3015c rna13258 142.00 -16.40 17 76.47 88.24 -api-miR-3015c rna27017 140.00 -9.84 19 68.42 84.21 -api-miR-3015c rna21860 145.00 -12.34 18 66.67 88.89 -api-miR-3015c rna3392 141.00 -19.50 16 81.25 87.50 -api-miR-3015c rna23601 141.00 -15.48 16 62.50 87.50 -api-miR-3015c rna9510 148.00 -11.00 13 84.62 84.62 -api-miR-3015c rna20458 149.00 -13.21 16 68.75 93.75 -api-miR-3015c rna10258 151.00 -16.97 20 75.00 75.00 -api-miR-3015c rna9606 144.00 -17.35 17 76.47 82.35 -api-miR-3015c rna7623 145.00 -11.95 19 68.42 84.21 -api-miR-3015c rna11568 142.00 -13.31 20 65.00 80.00 -api-miR-3015c rna16180 141.00 -10.44 18 61.11 88.89 -api-miR-3015c rna3550 141.00 -11.77 14 78.57 92.86 -api-miR-3015c rna9985 153.00 -14.01 18 66.67 83.33 -api-miR-3015c rna17166 144.00 -14.37 18 72.22 83.33 -api-miR-3015c rna1968 140.00 -11.66 17 64.71 88.24 -api-miR-3015c rna22717 140.00 -9.95 7 100.00 100.00 -api-miR-3015c rna20742 146.00 -14.45 16 75.00 87.50 -api-miR-3015c rna27026 161.00 -15.78 16 75.00 87.50 -api-miR-3015c rna7100 143.00 -17.49 13 84.62 92.31 -api-miR-3015c rna2491 147.00 -14.95 17 88.24 88.24 -api-miR-3015c rna18690 149.00 -12.46 12 83.33 83.33 -api-miR-3015c rna23189 145.00 -16.36 18 66.67 88.89 -api-miR-3015c rna24916 175.00 -20.91 18 83.33 88.89 -api-miR-3015c rna18519 151.00 -13.33 17 70.59 82.35 -api-miR-3015c rna25226 153.00 -15.72 18 66.67 83.33 -api-miR-3015c rna27650 152.00 -19.57 14 85.71 100.00 -api-miR-3015c rna3411 148.00 -13.28 17 76.47 88.24 -api-miR-3015c rna14753 140.00 -13.16 17 70.59 82.35 -api-miR-3015c rna24074 147.00 -15.98 10 90.00 90.00 -api-miR-3015c rna24074 140.00 -16.50 11 81.82 100.00 -api-miR-3015c rna13958 142.00 -11.56 17 64.71 82.35 -api-miR-3015c rna7088 157.00 -13.96 18 72.22 83.33 -api-miR-3015c rna8053 150.00 -14.39 13 76.92 84.62 -api-miR-3015c rna21942 145.00 -12.36 16 68.75 87.50 -api-miR-3015c rna26029 147.00 -22.31 17 82.35 94.12 -api-miR-3015c rna1229 155.00 -16.04 16 75.00 87.50 -api-miR-3015c rna13990 163.00 -12.37 18 77.78 77.78 -api-miR-3015c rna13990 142.00 -13.18 18 77.78 83.33 -api-miR-3015c rna11739 149.00 -19.87 20 75.00 85.00 -api-miR-3015c rna12547 141.00 -16.12 18 72.22 83.33 -api-miR-3015c rna16644 145.00 -12.42 16 68.75 87.50 -api-miR-3015c rna6483 144.00 -15.79 17 70.59 88.24 -api-miR-3015c rna3294 144.00 -9.20 17 70.59 88.24 -api-miR-3015c rna150 143.00 -14.61 17 70.59 88.24 -api-miR-3015c rna26181 161.00 -19.03 12 91.67 100.00 -api-miR-3015c rna24748 153.00 -20.38 21 76.19 85.71 -api-miR-3015c rna64 148.00 -14.46 13 76.92 92.31 -api-miR-3015c rna4056 148.00 -12.77 17 70.59 76.47 -api-miR-3015c rna19127 149.00 -12.48 18 72.22 72.22 -api-miR-3015c rna13598 141.00 -12.36 8 87.50 100.00 -api-miR-3015c rna24512 140.00 -12.97 15 66.67 86.67 -api-miR-3015c rna23697 141.00 -13.42 18 72.22 77.78 -api-miR-3015c rna22559 141.00 -10.63 19 68.42 78.95 -api-miR-3015c rna18526 151.00 -13.33 17 70.59 82.35 -api-miR-3015c rna22965 143.00 -13.51 18 61.11 83.33 -api-miR-3015c rna13272 156.00 -13.56 17 76.47 82.35 -api-miR-3015c rna23107 141.00 -13.80 13 92.31 92.31 -api-miR-3015c rna17282 142.00 -9.46 17 64.71 82.35 -api-miR-3015c rna10246 145.00 -14.46 19 68.42 84.21 -api-miR-3015c rna24478 140.00 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89.47 -api-miR-3015c rna14169 153.00 -16.97 22 72.73 72.73 -api-miR-3015c rna16389 143.00 -7.72 14 78.57 85.71 -api-miR-3015c rna16179 141.00 -10.44 18 61.11 88.89 -api-miR-3015c rna6534 157.00 -15.87 12 91.67 91.67 -api-miR-3015c rna13289 140.00 -11.97 17 70.59 82.35 -api-miR-3015c rna26389 142.00 -15.10 18 72.22 83.33 -api-miR-3015c rna20706 162.00 -16.88 19 68.42 89.47 -api-miR-3015c rna20706 149.00 -15.06 21 66.67 76.19 -api-miR-3015c rna8018 145.00 -10.29 12 75.00 83.33 -api-miR-3015c rna3357 151.00 -14.42 12 91.67 91.67 -api-miR-3015c rna3357 142.00 -15.79 19 63.16 84.21 -api-miR-3015c rna28142 141.00 -14.56 12 75.00 100.00 -api-miR-3015c rna10765 142.00 -10.44 17 64.71 82.35 -api-miR-3015c rna24342 142.00 -11.52 17 70.59 76.47 -api-miR-3015c rna5766 152.00 -13.71 17 70.59 82.35 -api-miR-3015c rna20453 162.00 -15.18 17 70.59 88.24 -api-miR-3015c rna30783 140.00 -17.84 11 81.82 100.00 -api-miR-3015c rna31072 141.00 -20.83 20 65.00 85.00 -api-miR-3015c rna22607 149.00 -16.05 18 72.22 88.89 -api-miR-3015c rna26358 142.00 -11.43 18 72.22 72.22 -api-miR-3015c rna25225 153.00 -15.72 18 66.67 83.33 -api-miR-3015c rna24447 150.00 -14.54 17 70.59 88.24 -api-miR-3015c rna1259 154.00 -17.08 17 70.59 94.12 -api-miR-3015c rna1259 148.00 -17.06 21 71.43 71.43 -api-miR-3015c rna15872 141.00 -13.77 20 60.00 90.00 -api-miR-3015c rna21943 145.00 -12.36 16 68.75 87.50 -api-miR-3015c rna1748 151.00 -20.14 18 83.33 88.89 -api-miR-3015c rna11413 143.00 -8.62 14 78.57 85.71 -api-miR-3015c rna12354 153.00 -11.93 18 72.22 77.78 -api-miR-3015c rna7281 142.00 -9.57 17 58.82 88.24 -api-miR-3015c rna24920 175.00 -20.91 18 83.33 88.89 -api-miR-3015c rna9316 140.00 -13.14 17 82.35 88.24 -api-miR-3015c rna3382 141.00 -10.65 16 62.50 87.50 -api-miR-3015c rna16332 150.00 -19.32 17 82.35 94.12 -api-miR-3015c rna11738 149.00 -19.87 20 75.00 85.00 -api-miR-3015c rna27980 151.00 -17.61 18 66.67 88.89 -api-miR-3015c rna8068 140.00 -17.53 14 71.43 92.86 -api-miR-3015c rna7136 144.00 -11.08 17 70.59 88.24 -api-miR-3015c rna65 148.00 -14.46 13 76.92 92.31 -api-miR-3015c rna13934 141.00 -11.54 8 87.50 100.00 -api-miR-3015c rna21178 143.00 -14.72 18 61.11 83.33 -api-miR-3015c rna15306 147.00 -12.09 16 75.00 93.75 -api-miR-3015c rna11382 141.00 -15.92 15 86.67 93.33 -api-miR-3015c rna15841 146.00 -15.34 17 70.59 82.35 -api-miR-3015c rna20457 149.00 -13.21 16 68.75 93.75 -api-miR-3015c rna14616 156.00 -13.56 17 76.47 82.35 -api-miR-3015c rna13744 140.00 -13.06 17 70.59 82.35 -api-miR-3015c rna3548 141.00 -11.77 14 78.57 92.86 -api-miR-3015c rna28056 140.00 -11.16 17 64.71 88.24 -api-miR-3015c rna13456 144.00 -11.74 17 70.59 88.24 -api-miR-3015c rna24100 146.00 -15.84 20 70.00 80.00 -api-miR-3015c rna9085 146.00 -13.50 17 70.59 82.35 -api-miR-3015c rna28681 145.00 -12.74 16 68.75 87.50 -api-miR-3015c rna18156 144.00 -12.50 15 73.33 86.67 -api-miR-3015c rna13597 141.00 -12.36 8 87.50 100.00 -api-miR-3015c rna23190 145.00 -16.36 18 66.67 88.89 -api-miR-3015c rna3693 147.00 -15.99 14 78.57 92.86 -api-miR-3015c rna663 168.00 -18.83 17 88.24 88.24 -api-miR-3015c rna16390 143.00 -7.72 14 78.57 85.71 -api-miR-3015c rna26794 141.00 -12.07 16 68.75 81.25 -api-miR-3015c rna16086 153.00 -10.27 19 68.42 78.95 -api-miR-3015c rna16086 140.00 -13.09 17 64.71 88.24 -api-miR-3015c rna5483 150.00 -13.21 17 64.71 94.12 -api-miR-3015c rna22686 143.00 -12.85 19 68.42 68.42 -api-miR-3015c rna14005 143.00 -10.84 17 76.47 82.35 -api-miR-279a rna2564 145.00 -12.32 8 100.00 100.00 -api-miR-279a rna19893 141.00 -22.51 16 75.00 93.75 -api-miR-279a rna16140 150.00 -11.92 19 68.42 73.68 -api-miR-279a rna16670 145.00 -15.79 18 72.22 83.33 -api-miR-279a rna2240 140.00 -10.61 7 100.00 100.00 -api-miR-279a rna13583 141.00 -12.25 18 72.22 77.78 -api-miR-279a rna28658 146.00 -13.54 19 68.42 68.42 -api-miR-279a rna21293 151.00 -14.51 12 91.67 91.67 -api-miR-279a rna2245 140.00 -10.61 7 100.00 100.00 -api-miR-279a rna12192 142.00 -8.00 9 88.89 88.89 -api-miR-279a rna2247 140.00 -10.61 7 100.00 100.00 -api-miR-279a rna19267 145.00 -11.99 8 100.00 100.00 -api-miR-279a rna19673 151.00 -18.17 16 75.00 81.25 -api-miR-279a rna24063 147.00 -12.97 10 90.00 90.00 -api-miR-279a rna16554 146.00 -15.92 9 88.89 100.00 -api-miR-279a rna6897 141.00 -12.50 18 72.22 77.78 -api-miR-279a rna2182 147.00 -12.45 18 66.67 66.67 -api-miR-279a rna2182 145.00 -10.53 8 100.00 100.00 -api-miR-279a rna27923 149.00 -16.21 14 78.57 85.71 -api-miR-279a rna16358 140.00 -8.46 7 100.00 100.00 -api-miR-279a rna28180 147.00 -12.74 18 66.67 66.67 -api-miR-279a rna22880 149.00 -17.16 18 77.78 83.33 -api-miR-279a rna25873 146.00 -9.22 13 76.92 76.92 -api-miR-279a rna24998 149.00 -10.62 12 83.33 83.33 -api-miR-279a rna28948 143.00 -12.06 18 66.67 77.78 -api-miR-279a rna2226 140.00 -10.61 7 100.00 100.00 -api-miR-279a rna20495 142.00 -13.11 18 72.22 72.22 -api-miR-279a rna28749 140.00 -8.46 7 100.00 100.00 -api-miR-279a rna15418 141.00 -12.90 18 72.22 77.78 -api-miR-279a rna8134 141.00 -12.94 18 72.22 77.78 -api-miR-279a rna16193 149.00 -12.82 18 72.22 72.22 -api-miR-279a rna19655 140.00 -10.64 7 100.00 100.00 -api-miR-279a rna2590 145.00 -9.54 14 78.57 78.57 -api-miR-279a rna21241 150.00 -14.36 20 70.00 70.00 -api-miR-279a rna2260 140.00 -10.61 7 100.00 100.00 -api-miR-279a rna21604 151.00 -15.05 14 78.57 78.57 -api-miR-279a rna16223 140.00 -8.46 7 100.00 100.00 -api-miR-279a rna4727 144.00 -9.08 11 81.82 81.82 -api-miR-279a rna2217 140.00 -10.61 7 100.00 100.00 -api-miR-279a rna25012 147.00 -14.16 16 75.00 75.00 -api-miR-279a rna664 148.00 -11.29 19 73.68 73.68 -api-miR-279a rna4001 141.00 -12.34 8 87.50 100.00 -api-miR-279a rna14789 141.00 -8.46 18 66.67 66.67 -api-miR-279a rna27671 166.00 -22.87 19 78.95 84.21 -api-miR-279a rna11350 145.00 -10.82 8 100.00 100.00 -api-miR-279a rna7883 145.00 -10.53 8 100.00 100.00 -api-miR-279a rna1963 141.00 -13.46 18 72.22 77.78 -api-miR-279a rna17088 151.00 -10.64 14 78.57 78.57 -api-miR-279a rna13748 173.00 -24.00 18 88.89 88.89 -api-miR-279a rna2251 140.00 -10.61 7 100.00 100.00 -api-miR-279a rna25481 140.00 -13.14 15 73.33 80.00 -api-miR-279a rna21578 154.00 -14.99 13 84.62 84.62 -api-miR-279a rna21970 141.00 -12.14 8 87.50 100.00 -api-miR-279a rna26202 143.00 -9.96 17 70.59 70.59 -api-miR-279a rna19382 147.00 -12.34 19 73.68 73.68 -api-miR-279a rna21545 150.00 -9.08 17 70.59 70.59 -api-miR-279a rna5947 152.00 -14.02 11 90.91 90.91 -api-miR-279a rna17960 141.00 -10.61 18 66.67 66.67 -api-miR-279a rna28947 143.00 -12.06 18 66.67 77.78 -api-miR-279a rna28816 146.00 -16.45 19 73.68 78.95 -api-miR-279a rna24623 145.00 -10.53 8 100.00 100.00 -api-miR-279a rna15329 145.00 -12.71 8 100.00 100.00 -api-miR-279a rna15329 145.00 -12.78 8 100.00 100.00 -api-miR-279a rna6604 140.00 -10.64 7 100.00 100.00 -api-miR-279a rna18313 141.00 -9.46 8 87.50 100.00 -api-miR-279a rna21830 143.00 -13.81 17 70.59 70.59 -api-miR-279a rna2233 140.00 -10.61 7 100.00 100.00 -api-miR-279a rna28331 151.00 -20.25 16 75.00 81.25 -api-miR-279a rna21836 163.00 -15.20 18 77.78 77.78 -api-miR-279a rna2238 140.00 -10.61 7 100.00 100.00 -api-miR-279a rna20430 148.00 -14.20 15 73.33 73.33 -api-miR-279a rna6603 140.00 -10.64 7 100.00 100.00 -api-miR-279a rna22200 140.00 -11.69 7 100.00 100.00 -api-miR-279a rna5614 145.00 -13.40 14 78.57 78.57 -api-miR-279a rna10745 158.00 -19.99 22 72.73 72.73 -api-miR-279a rna26388 142.00 -22.65 19 78.95 84.21 -api-miR-279a rna5489 151.00 -14.45 18 72.22 83.33 -api-miR-279a rna8257 151.00 -13.69 18 72.22 83.33 -api-miR-279a rna15132 140.00 -9.27 18 72.22 77.78 -api-miR-279a rna8010 151.00 -16.64 18 72.22 83.33 -api-miR-279a rna14324 143.00 -16.08 21 71.43 71.43 -api-miR-279a rna28953 143.00 -12.06 18 66.67 77.78 -api-miR-279a rna6344 146.00 -12.14 17 64.71 70.59 -api-miR-279a rna7438 147.00 -9.64 10 90.00 90.00 -api-miR-279a rna27401 145.00 -12.45 8 100.00 100.00 -api-miR-279a rna16922 151.00 -16.56 12 91.67 91.67 -api-miR-279a rna12014 140.00 -15.16 15 73.33 80.00 -api-miR-279a rna2484 141.00 -17.59 18 66.67 83.33 -api-miR-279a rna13510 142.00 -15.13 15 80.00 86.67 -api-miR-279a rna15430 154.00 -16.61 17 70.59 76.47 -api-miR-279a rna22197 140.00 -11.69 7 100.00 100.00 -api-miR-279a rna23842 140.00 -10.03 7 100.00 100.00 -api-miR-279a rna7063 155.00 -19.59 18 77.78 83.33 -api-miR-279a rna24166 145.00 -12.71 8 100.00 100.00 -api-miR-279a rna2221 140.00 -10.61 7 100.00 100.00 -api-miR-279a rna27781 149.00 -18.46 18 77.78 83.33 -api-miR-279a rna14562 150.00 -12.71 17 70.59 70.59 -api-miR-279a rna17833 145.00 -12.45 8 100.00 100.00 -api-miR-279a rna20431 151.00 -12.71 14 78.57 78.57 -api-miR-279a rna19231 150.00 -10.75 20 70.00 70.00 -api-miR-279a rna21546 150.00 -9.08 17 70.59 70.59 -api-miR-279a rna21829 143.00 -13.81 17 70.59 70.59 -api-miR-279a rna22109 140.00 -11.10 7 100.00 100.00 -api-miR-279a rna28817 146.00 -16.45 19 73.68 78.95 -api-miR-279a rna10230 158.00 -16.26 15 86.67 86.67 -api-miR-279a rna28177 147.00 -12.74 18 66.67 66.67 -api-miR-279a rna17732 145.00 -16.28 18 72.22 83.33 -api-miR-279a rna7334 141.00 -12.70 8 87.50 100.00 -api-miR-279a rna7676 140.00 -10.64 7 100.00 100.00 -api-miR-279a rna2591 145.00 -9.54 14 78.57 78.57 -api-miR-279a rna24627 145.00 -10.53 8 100.00 100.00 -api-miR-279a rna30837 144.00 -18.40 17 76.47 82.35 -api-miR-279a rna8756 145.00 -10.53 8 100.00 100.00 -api-miR-279a rna13851 140.00 -13.23 18 72.22 77.78 -api-miR-279a rna7365 174.00 -20.99 17 88.24 88.24 -api-miR-279a rna868 142.00 -12.14 13 69.23 76.92 -api-miR-279a rna8813 142.00 -11.26 9 88.89 88.89 -api-miR-279a rna17074 140.00 -10.21 7 100.00 100.00 -api-miR-279a rna11349 145.00 -10.82 8 100.00 100.00 -api-miR-279a rna10106 145.00 -10.53 8 100.00 100.00 -api-miR-279a rna2372 142.00 -13.24 13 76.92 92.31 -api-miR-279a rna255 145.00 -12.71 8 100.00 100.00 -api-miR-279a rna13805 155.00 -16.33 16 81.25 81.25 -api-miR-279a rna13805 145.00 -15.99 8 100.00 100.00 -api-miR-279a rna13805 140.00 -10.58 7 100.00 100.00 -api-miR-279a rna18404 140.00 -14.45 7 100.00 100.00 -api-miR-279a rna8084 157.00 -15.05 18 77.78 77.78 -api-miR-279a rna8084 142.00 -11.00 15 73.33 73.33 -api-miR-279a rna2256 140.00 -10.61 7 100.00 100.00 -api-miR-279a rna27026 150.00 -13.26 21 66.67 71.43 -api-miR-279a rna28583 140.00 -9.26 7 100.00 100.00 -api-miR-279a rna14556 145.00 -10.53 8 100.00 100.00 -api-miR-279a rna5401 140.00 -7.96 7 100.00 100.00 -api-miR-279a rna8818 141.00 -10.25 8 87.50 100.00 -api-miR-279a rna27253 141.00 -19.11 20 70.00 80.00 -api-miR-279a rna26199 143.00 -9.96 17 70.59 70.59 -api-miR-279a rna6208 140.00 -8.43 7 100.00 100.00 -api-miR-279a rna12634 140.00 -10.64 7 100.00 100.00 -api-miR-279a rna2213 140.00 -10.61 7 100.00 100.00 -api-miR-279a rna4278 151.00 -17.35 12 91.67 91.67 -api-miR-279a rna16360 140.00 -8.46 7 100.00 100.00 -api-miR-279a rna3294 145.00 -13.99 8 100.00 100.00 -api-miR-279a rna21213 147.00 -21.46 16 81.25 87.50 -api-miR-279a rna2565 145.00 -12.32 8 100.00 100.00 -api-miR-279a rna13819 160.00 -19.91 17 82.35 82.35 -api-miR-279a rna14390 150.00 -24.63 15 86.67 93.33 -api-miR-279a rna27924 149.00 -16.21 14 78.57 85.71 -api-miR-279a rna16359 140.00 -8.46 7 100.00 100.00 -api-miR-279a rna22198 140.00 -11.69 7 100.00 100.00 -api-miR-279a rna7992 150.00 -18.65 15 80.00 80.00 -api-miR-279a rna24977 145.00 -11.63 8 100.00 100.00 -api-miR-279a rna16281 145.00 -12.65 8 100.00 100.00 -api-miR-279a rna17858 140.00 -11.47 7 100.00 100.00 -api-miR-279a rna25009 147.00 -14.16 16 75.00 75.00 -api-miR-279a rna2214 140.00 -10.61 7 100.00 100.00 -api-miR-279a rna15732 140.00 -8.46 7 100.00 100.00 -api-miR-279a rna27885 141.00 -12.34 8 87.50 100.00 -api-miR-279a rna5465 142.00 -9.54 15 73.33 73.33 -api-miR-279a rna15011 145.00 -9.77 8 100.00 100.00 -api-miR-279a rna13817 160.00 -19.91 17 82.35 82.35 -api-miR-279a rna15352 145.00 -12.71 8 100.00 100.00 -api-miR-279a rna17432 140.00 -8.43 7 100.00 100.00 -api-miR-279a rna27672 166.00 -22.87 19 78.95 84.21 -api-miR-279a rna1959 141.00 -13.46 18 72.22 77.78 -api-miR-279a rna4728 144.00 -9.08 11 81.82 81.82 -api-miR-279a rna13584 141.00 -12.25 18 72.22 77.78 -api-miR-279a rna24628 145.00 -10.53 8 100.00 100.00 -api-miR-279a rna2789 141.00 -12.40 8 87.50 100.00 -api-miR-279a rna12191 142.00 -8.00 9 88.89 88.89 -api-miR-279a rna8229 151.00 -14.33 18 77.78 77.78 -api-miR-279a rna2248 140.00 -10.61 7 100.00 100.00 -api-miR-279a rna17489 145.00 -12.32 8 100.00 100.00 -api-miR-279a rna19953 148.00 -10.97 19 73.68 73.68 -api-miR-279a rna17076 140.00 -10.21 7 100.00 100.00 -api-miR-279a rna19892 141.00 -22.51 16 75.00 93.75 -api-miR-279a rna2222 140.00 -10.61 7 100.00 100.00 -api-miR-279a rna2246 140.00 -10.61 7 100.00 100.00 -api-miR-279a rna9635 146.00 -19.30 23 65.22 65.22 -api-miR-279a rna17538 140.00 -10.64 7 100.00 100.00 -api-miR-279a rna13747 173.00 -24.00 18 88.89 88.89 -api-miR-279a rna21294 151.00 -14.51 12 91.67 91.67 -api-miR-279a rna7335 141.00 -12.70 8 87.50 100.00 -api-miR-279a rna13820 160.00 -19.91 17 82.35 82.35 -api-miR-279a rna25648 155.00 -15.02 18 72.22 72.22 -api-miR-279a rna16112 140.00 -8.46 7 100.00 100.00 -api-miR-279a rna16112 140.00 -11.40 7 100.00 100.00 -api-miR-279a rna28946 143.00 -12.06 18 66.67 77.78 -api-miR-279a rna8223 149.00 -14.11 18 77.78 83.33 -api-miR-279a rna16113 140.00 -8.46 7 100.00 100.00 -api-miR-279a rna16113 140.00 -11.40 7 100.00 100.00 -api-miR-279a rna14062 145.00 -9.64 8 100.00 100.00 -api-miR-279a rna24995 149.00 -10.62 12 83.33 83.33 -api-miR-279a rna28104 159.00 -13.59 14 85.71 85.71 -api-miR-279a rna9665 145.00 -12.71 8 100.00 100.00 -api-miR-279a rna9665 142.00 -22.76 19 78.95 84.21 -api-miR-279a rna26200 143.00 -9.96 17 70.59 70.59 -api-miR-279a rna8900 145.00 -12.71 8 100.00 100.00 -api-miR-279a rna24277 151.00 -12.00 14 78.57 78.57 -api-miR-279a rna181 145.00 -12.71 8 100.00 100.00 -api-miR-279a rna6966 140.00 -10.61 7 100.00 100.00 -api-miR-279a rna6605 140.00 -10.64 7 100.00 100.00 -api-miR-279a rna14788 141.00 -8.46 18 66.67 66.67
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/mirna.asko.tsv Wed Apr 18 06:26:33 2018 -0400 @@ -0,0 +1,360 @@ +mirna seq +api-miR-3015c AACCAGATGTTGTAAGAACGA +api-miR-279a TGACTAGATCCACACTCATCC +api-miR-3045a CAGAATAAGGGCACACTAGATTAACG +api-miR-3021 TTGTCTTGTGTAGTCCATGATAGCATC +api-miR-71 TGAAAGACATGGGTAGTGAGATG +api-miR-3041 TTAAAGCTTTGATGACGGGATA +api-miR-3038 TGGGGTTTCAATAGGCATTTACC +api-miR-3053 CCACGGTTGAATAAGGTACCATA +api-miR-219 TGATTGTCCAAACGCAATTCTTG +api-miR-252b CTAAGTAGTAGCGCCAACGGTGA +api-miR-3056 TAAGACATTATCTGAAGATTTC +api-miR-3030 AGGTAACAGGTTTGTTTTGTGA +api-miR-3017a CGGTCTGTCGCAGAACACGGCA +api-miR-3033 TCCACGGACATCCATTTTTGTGA +api-miR-3032 TGTTAGTATAACTCTTAGTAACA +api-miR-3028 TACGGTTTAGACTATTCATTTT +api-miR-3023 AAGCTTGATTTCAGAAATGTCGA +api-miR-184a TGGACGGAGAACTGATAAGGGC +api-miR-29 TAGCACCATTTGAAACCAGT +api-miR-7 TGGAAGACTAGTGATTTTGTTGTT +api-miR-3040 CAGCCGGTGGTGACTGTTTCCACA +api-miR-137 TATTGCTTGAGAATACACGTAG +api-miR-998 TAGCACCATGGAATTCAGCTG +api-miR-306 TCAGGTACCAAGTGATTTCTGA +api-miR-3027 CCAGTCTTGCATTTATTCCACT +api-miR-275 TCAGGTACCTGAAGTAGCGCG +api-miR-3015a TTACTGGACATTGTAAGAACGG +api-miR-3042 GAGGGCAGATTATTTCTGATAC +api-miR-3026 TCGGCGTAACATGATGTGTGCG +api-miR-92a TATTGCACATGTCCCGGCCAAT +api-miR-124 TAAGGCACGCGGTGAATGCCA +api-miR-981 TTCGTTGTCGATGAAACCTTGA +api-miR-8 TAATACTGTCAGGTAATGATGTC +api-miR-276 TAGGAACTTCATACCGTGCTCT +api-miR-281 TGTCATGGAGTTGCTCTCTTT +api-miR-929 AAATTGACTCTAGTAGGGAG +api-miR-184b TGGACGGAGAACTGATAAAGGA +api-miR-278 TCGGTGGGACTTTCGTTCGTTT +api-miR-2a TATCACAGCCAGCTTTGATGAGCG +api-miR-2b TATCACAGCCAGCTTTGTATGAGCA +api-miR-277 TAAATGCACTATCTGGTACGACA +api-let-7 TGAGGTAGTTGGTTGTATAGT +api-miR-3046 TTATAGATAATACAAGCATAT +api-miR-3015b CCGGACATTGTGAGAACGGCTC +api-miR-3039 AAAAACGTCAAAACACGGTGG +api-miR-3022 TCTCGTTATATCTGACGTCGGGGAA +api-miR-9a TCTTTGGTTATCTAGCTGTATGA +api-miR-279b TGACTAGATCTACACTCATCA +api-miR-971 TTGGTGTTCAACCTTACAGTGAG +api-miR-317 TGAACACAGCTGGTGGTATCT +api-miR-3051 AAGGAACGTTAAAAACCATTGT +api-miR-315 TTTTGATTGTTGCTCAGAAAGCC +api-miR-14 TCAGTCTTTTTCTCTCTCCTAT +api-bantam TGAGATCATTGTGAAAGCTAATT +api-miR-3037 TTACAAAACATTCAGAATTTTG +api-miR-3049 TCGGGAAGGCAGCTGCGGCGGACT +api-miR-3034 TGCAACTGTACAATGACAATAGTAGGA +api-miR-87a GTGAGCAAAGTTTCAGGTGTGC +api-miR-3043 CACATTAAGGACTCATATTGGAG +api-miR-3044 TGAATTCTTATGTGAGCTTTGC +api-miR-3050 TGAGATCTTGATAAACTCGCCT +api-miR-3035 TTACTGGTCATCGTCTTAACTT +api-miR-3024 TCTTTGGGATTTAATAGAGCCGGT +api-miR-263b CTTGGCACTGGAAGAATTCACAGA +api-miR-993 GAAGCTCGTCTCTACAGGTATCT +api-miR-190 AGATATGTTTGATATTCTTGGTTG +api-miR-3036 ATTGGTTTCTAGATCTCAGCA +api-miR-13a TATCACAGCCACTTTGATGAGC +api-miR-1000 ATATTGTCCTGTCACAGCAGTA +api-miR-1 TGGAATGTAAAGAAGTATGGAG +api-miR-92b TATTGCACTTGACCCAGCCTGC +api-miR-3045b GCCTGGTGTGCTCTTATTCTGAA +api-miR-316 TGTCTTTTTCCGCTTTGCTGCCG +api-miR-2765 TGGTAACTCCAAACCATTGCCGG +api-miR-996 TGACTAGAGTTACACTCGTCA +api-miR-2796 GTAGGCCGGCGGAAACTACTAG +api-miR-1923 AATCGCGTACCGTTGCACAGTCGTGGC +api-miR-34 TGGCAGTGTGATTAGCTGGTT +api-miR-3017b CGGTCTGTCACGGAACACGGGA +api-miR-252a CTAAGTACTAGTGCCGCGGGAG +api-miR-210 TTGTGCGTGTGACATCGGCTA +api-miR-3019 TACTGACTTTCTAATTGATTTA +api-miR-9b TCTTTGGTACTTTAGCTGTAG +api-miR-3054 TTAGTGGATTCGCCTGTTGACACCGGC +api-miR-3029 AAAGACGTAAATGTTACCTGCG +api-miR-100 GACCCGTAGATCCGAACTTGTG +api-miR-927 TTTAGAATTCCTACGCTTTACC +api-miR-3047 CAAAACATTCAAAACTCCCTAC +api-miR-2c CCGTCAAAGCGGGCTGTCGTA +api-miR-965 TAAGCGTATAGCTTTTCCCCTT +api-miR-3016 ATTGGTAACACATACGTCTTTAG +api-miR-iab-4 ACGTATACTAAATGTATCCTGA +api-miR-10 ACCCTGTAGATCCGAATTTGT +api-miR-263a AATGGCACTGAAAGAATTCACGGG +api-miR-3018 AAAGAATAGAAAATCGAAGGTG +api-miR-307 CCACAACCTCCTTGAGTGAGCGA +api-miR-3020 GTAAGAATAATGATCCATTAGA +api-miR-3031 TTGCTTTTTAACAAGTTTCACTA +api-miR-3055 GCAGTTCGCGATAAGCGGCCG +api-miR-3052 TGCATTCTTTGAGCTTAGCATGATGGCT +api-miR-3025 AGTAGTAAGAGATCAGTTGGATA +api-miR-3048 TGTGAACTGGTCATGCTCTTAA +api-miR-87b GTGAGCAAAGTTTCAGGCGTGT +GL349742_15837 TATCACAGCCGTTTTTGACAATT +GL355572_46131 TCAGTATGTGTCCTTGAATGTG +GL349872_24254 ACCCGTTTTCATGAGCGTACTG +GL349650_6646 TCAGTATGTGTCCTTGAATGTG +GL349650_6640 TCAGTATGTGTCCTTGAATGTG +GL349650_6638 TCAGTATGTGTCCTTGAATGTG +GL349650_6636 TCAGTATGTGTCCTTGAATGTG +GL350468_38246 TTTGTTCGTTCGGCTCGAGTCA +GL350757_41318 CTACTTGATGAAAAATATCCT +GL350757_41320 CTACTTGATGAAAAATATCCT +GL350757_41324 CTACTTGATGAAAAATATCCT +GL349642_4945 TCCAAGGACGTCCATTTGACTGT +GL349642_4963 TCCAAGGACGTCCATTTGACTGT +GL349642_4959 TCCAAGGACGTCCATTTGACTGT +GL350757_41328 CTACTTGATGAAAAATATCCT +GL350222_34242 ATTGTACTTCATCAGGTGC +GL350757_41322 CTACTTGATGAAAAATATCCT +GL350757_41326 CTACTTGATGAAAAATATCCT +GL350370_36909 CATTCAAGGACTCATATTGGA +GL349714_13728 ATTAAAATATTATGTTGTACT +GL349714_13726 ATTAAAATATTATGTTGTACT +GL349714_13724 ATTAAAATATTATGTTGTACT +GL350343_36473 TTGCTTTTTAACAAGTTTCGCT +GL349642_4954 ACGAGTACGGATGCCCATGAACG +GL349642_4972 ACGAGTACGGATGCCCATGAACG +GL349642_4958 ACGAGTACGGATGCCCATGAACG +GL349642_4976 ACGAGTACGGATGCCCATGAACG +GL349642_4980 ACGAGTACGGATGCCCATGAACG +GL349919_26520 TAGGATTCGTGAACATGTTTGA +GL349630_2423 TCGGTACGTGTCCTTGTATGACT +GL349630_2421 TCGGTACGTGTCCTTGTATGACT +GL349630_2419 TCGGTACGTGTCCTTGTATGACT +GL349630_2425 TCGGTACGTGTCCTTGTATGACT +GL351656_44870 TATCACTCTGTTATACTATAAG +GL349919_26570 TTTGATATCAGGTTGTAGCTCC +GL350151_32866 TAGTAACTCGTGAACATGTTAA +GL349642_4961 TTCATGGAAGTCCGTTAACCTGC +GL349919_26564 TAGGTACTTAAACTTTAAAAGT +GL349919_26590 TAGGTACTTAAACTTTAAAAGT +GL349919_26542 TAGGTACTTAAACTTTAAAAGT +GL349826_21746 AGGCAAGATGAGGCAAAGCTGT +GL350151_32872 TCGACCCGGTCACTAGAAAAAT +GL349928_26838 AAGGTAACTAGATCACTATGGGA +GL350343_36481 CCACACATTCAATAATTCCTTAC +GL349642_4947 TCCAAGGAAGTCCGTTAACCTGC +GL349642_4955 TCCAAGGAAGTCCGTTAACCTGC +GL349642_4951 TCCAAGGAAGTCCGTTAACCTGC +GL349642_4965 TCCAAGGAAGTCCGTTAACCTGC +GL350737_41242 CCACTTTGAATTCTTTAACGA +GL350151_32910 CCACTTTGAATTCTTTAACGA +GL349728_14765 TACTGGAATTGGTGTCTCTACA +GL349650_6644 CATTAAAGGACTCATATTGAAG +GL349650_6642 CATTAAAGGACTCATATTGAAG +GL349919_26592 ATGTCAATCTGTATACCAAAGA +GL349642_4978 ACGAGTACGGATTCCCATGAACG +GL350151_32898 CGGCATTTCTGTTTTCAATCT +GL351656_44862 CGGCATTTCTGTTTTCAATCT +GL349645_5454 ACAGTCTTTATTTTCTACGATG +GL349645_5448 ACAGTCTTTATTTTCTACGATG +GL369698_47844 ACGGGTATACATGTATGTTATC +GL350151_32915 ACGGGTATACATGTATGTTATC +GL350151_32913 ACGGGTATACATGTATGTTATC +GL350737_41243 ACGGGTATACATGTATGTTATC +GL369698_47842 ACGGGTATACATGTATGTTATC +GL349642_4967 TCCATAGACGTCCATTTACCTGC +GL366836_47447 TCCATAGACGTCCATTTACCTGC +GL350682_40710 GGTGGCCGAGCGGTTTAAG +GL366836_47437 TCCATAGACGTCCATTTACCTGC +GL350151_32870 TTTGGTCTCAGTTAGTGGCTCC +GL349801_20413 TCTACAACTTTGAGTTAATCACT +GL349645_5442 ACAGTCTTTATTTTCTACGACG +GL349919_26524 TAAGCCACTTCATACAAACTG +GL349643_5190 ACAGTTCGTGATATTCGGCTG +GL366836_47441 AGGTGAACGGATGTCCTTGAATG +GL349642_4969 AGGTGAACGGATGTCCTTGAATG +GL366836_47439 AGGTGAACGGATGTCCTTGAATG +GL366836_47445 AGGTGAACGGATGTCCTTGAATG +GL349645_5440 ACAGTCTTTATTTTCTACGATT +GL349645_5452 ACAGTCTTTATTTTCTACGATT +GL349645_5438 ACAGTCTTTATTTTCTACGATT +GL350151_32862 TTGTAACTCGTGAACATGTTAA +GL349634_3209 TATTAATCTTTAAGGTATTATT +GL349928_26830 ATTGGTAACACGTTTCGTCTTTAG +GL350277_35351 CACACGATCGCTTCACACTCG +GL349912_26190 TGTACCAGGACTTCTATTTATAT +GL349630_2427 TCGGTATGTGTCCTCGTATGACT +GL357043_46322 TCGGTATGTGTCCTCGTATGACT +GL349755_17087 TCGGTATGTGTCCTCGTATGACT +GL349919_26580 TAGGTACCTAAACTTTAAAAGT +GL349645_5431 TGACTAGAGTTTATACTACCGGT +GL349642_4982 ACGAGGACGGATGCCCATGAACG +GL349642_4974 ACGAGGACGGATGCCCATGAACG +GL349643_5188 GCCCAATATCGCGAAGTGCTA +GL349643_5204 GCCCAATATCGCGAAGTGCTA +GL349643_5194 GCCCAATATCGCGAAGTGCTA +GL349643_5208 GCCCAATATCGCGAAGTGCTA +GL349643_5200 GCCCAATATCGCGAAGTGCTA +GL349643_5182 GCGGTTCGTGATATTCGGCCG +GL350503_38763 ATTAAAATATTATGTTGTATA +GL349645_5433 CGGCTACCTTAGATCCAAGAC +GL351656_44865 ATGGGATGAAAGCATTGTATCT +GL349759_17778 TTTTCTTGTCTGGGTGTTGTAGT +GL349640_4529 TGGTACATTGTTTTATATTTCTT +GL350151_32875 AGAGTAGTAATTTTTGGTCTGTG +GL350151_32890 TGCCACTTTGAATTCTGTAACGA +GL349654_7296 TTCTCCACTTCTTAATGGCTG +GL350387_37119 TTCTCCACTCCTTATTGGCTG +GL350072_31218 AATCGGTGGCGTGAACCAGTGCT +GL367407_47522 AATCGGTGGCGTGAACCAGTGCT +GL349634_3207 AATCGGTGGCGTGAACCAGTGCT +GL367428_47529 CGTACTGAACCAGAAATACAACT +GL350151_32881 AGAGTAGTAATTTTTGGTCTGTG +GL350359_36742 TCACCATCGAGATGTATAGACT +GL350159_32994 ACTCGCTTTAAATCCATCTTGAA +GL365936_47352 TTCTCCACTTCTTAATGGCTG +GL350173_33281 TTCTCCACTTCTTAATGGCTG +GL349651_6856 ACGACCTTATAGTAGAAACTA +GL349774_18768 ACGACCTTATAGTAGAAACTA +GL349661_8394 ACGACCTTATAGTAGAAACTA +GL349660_8237 TGAGATCATTATAAAACTTTAT +GL349639_4112 TTCTCCACTTCTTATTAGCTG +GL349744_16060 TGTGTCATATCTTTCTGTTACA +GL351656_44860 TACAATTGCGGAATTTTCATAGA +GL349648_6188 CTTTTACACTGTTTTGTCTTTCT +GL350549_39290 AGGGATTTAGCGGACCAACGGTGG +GL350151_32856 TAGGTTTCCGTGAACATGTTAA +GL349645_5456 AAGGTAACGTCCAAGTCTCTAG +GL349645_5450 AAGGTAACGTCCAAGTCTCTAG +GL350151_32887 ATAAAATTCTTTTGTCCTATGA +GL350737_41239 ATAAAATTCTTTTGTCCTATGA +GL349642_4949 TCCACGGACGTCCGTTTTCCTGC +GL366836_47443 TCCACGGACGTCCGTTTTCCTGC +GL349755_17085 TCGGTATGTGTTCTTGTATGGC +GL360583_46764 TCGGTATGTGTTCTTGTATGGC +GL349755_17081 TCGGTATGTGTTCTTGTATGGC +GL349928_26823 CTTGGGTCAGAACAATATTATT +GL350051_30843 TCACAAAGAACTCATAATGAAG +GL349755_17091 TAGTGTGTGTCCTTGTATGACT +GL350150_32832 CTCATTTAGTCAAATCCAAAGT +GL349919_26522 TTGCCCAAAATATACAACCATC +GL349745_16220 TTGGTTTGAACTCTCATATTGAT +GL364454_47177 TGAGTGTGATATTATGGTTCTTG +GL349919_26514 TTGCCCAAAATATACAACCATC +GL349919_26547 TTTTAAAGTTTTGGTATGTTATGT +GL364454_47174 TTGCCCAAAATATACAACCATC +GL349919_26529 TTTTAAAGTTTTGGTATGTTATGT +GL350151_32894 CATGAAGTTTCTCTATTGGGTATC +GL350151_32878 CATGAAGTTTCTCTATTGGGTATC +GL351656_44874 CATGAAGTTTCTCTATTGGGTATC +GL350225_34332 TTAATTTCTTTTGACTTACAGG +GL350584_39655 TGAGATCATTATAATACTTTAT +GL349660_8245 TGAGATCATTATAATACTTTAT +GL350151_32885 TGATGGTCATATTATGGTCATTG +GL350151_32864 ATTGGAATTCGTTAACATGCTTG +GL350011_29531 AATCGTGACCAGGATGTTTGAACC +GL349660_8242 AAAGTATTGTTTTGGTCTTATT +GL349660_8235 TGAGATCATTATAATACTTTAT +GL350151_32911 TTGAGCTCTTGTCAATATTATG +GL349660_8244 TCAGTCTTATATTTCTCACTTT +GL350151_32860 ATTGGAATTCGTTAACATGCTTG +GL349660_8239 TGAGATCATTATAACACTTTAT +GL349645_5436 TAGTGGAAAATTTAGACTTTAG +GL349919_26546 TATCTTGCTTAACTTTAAAAGT +GL349919_26534 TATCTTGCTTAACTTTAAAAGT +GL349678_10254 CACGGACGTATCACCGAGGCGGCG +GL349637_3676 CACCGTGAAACTATTTTAAACT +GL351656_44863 TGATGGTCATATTATGGTCATTG +GL349919_26535 TTTTAAAGTTTTCGTATTATATG +GL349919_26573 TTTTAAAGTTTTCGTATTATATG +GL365736_47329 TTTTAAAGTTTTCGTATTATATG +GL350151_32900 TGATAGTCATATTATGGTCATTG +GL349897_25528 TCTTTGGTTTTAAAGTAGCCGT +GL350584_39652 TCAGTCTTATATTTCTCACTTT +GL350804_41763 GTAATCCGTTTAGACGTCGCAGT +GL349633_2878 CAAATTTATGTTGAGCAGTTGA +GL349928_26839 TCACTGGTGACAATTCATGAAG +GL349919_26556 TCTGTTCTTATACTACTTTCCA +GL349919_26550 TCTGTTCTTATACTACTTTCCA +GL357479_46406 GCCTGTATTTGTCCGCTGGTG +GL350151_32902 TTGGCCATAATATACACTCTCT +GL349935_27002 ATGCTCTCGAATTATCTAGGGA +GL349919_26554 TACCTACCTTAACTTTAAAAGT +GL350396_37175 TATATTTAATATGATGTGGGCG +GL373398_48269 TATATTTAATATGATGTGGGCG +GL349919_26528 AAAAATAATTTAAACTTTCTGT +GL349652_7061 CGCCGGTGATTGTTTTCGGA +GL349665_8703 ATCGACGCGTACGAACGGCGCC +GL349862_23755 CGCCATCCGCGTCCCGGC +GL349745_16094 TCTGTGACTGACTCGGATGGCGCC +GL351286_44212 TTATATCTCGAGACTTAGAACACT +GL349895_25394 TTACGTATACTGAAGGTATA +GL349681_10700 CGTGCCTGGACGTCACTCTGAC +GL350607_39936 CTTCCTTCGTCGTCGTCGTCGA +GL349773_18685 CCGCGGCTGGCTTGGACACCG +GL349624_956 TTTGATCCTCATTAGAAACCT +GL350677_40695 CGTTCGCCCGTCGCCGGC +GL349744_16062 TTATCGTCTTCACTTGGTCGCT +GL349745_16238 TTTGACCTCCGTTTGCGTGCAT +GL349911_26176 TTTACCCAATATATGGCTATAT +GL350550_39307 AACCGGCAATTGTAAGAACAGC +GL350344_36516 TGGTGTTTCTTATTCGGAATG +GL351656_44868 AATGGCAACAGCTGGAGTGC +GL367428_47527 CATGGGCGGCGCTAGGGATTGA +GL349919_26584 TATGGAGCTGTATGCCATATT +GL349621_14 TTTATTCGGGTTTTGGGTGC +GL360975_46812 CATGGGCGGCGCTAGGGATTGA +GL349912_26187 TTAGAATATCCTCGCTTTTATAGA +GL350396_37173 TATATTTAATATGATGTGGACG +GL349688_11446 ATATTGGTATCCGGTTGACTGTC +GL350223_34252 ATCCGGCTCGAAGGACCA +GL349641_4750 TTGTTGTTATCGTCATTTCGA +GL373398_48267 TATATTTAATATGATGTGGACG +GL349773_18697 TCTTTGGTATTCTAGCTGTAGG +GL349643_5180 GCAGTTCGTGATATTCGGCCG +GL349679_10332 CCCGGATACTTGTATTTTTACTG +GL350229_34377 CGGGTGCTTCTTATTTGGAACA +GL350396_37171 TATATTTAATATGATGTGGACG +GL349935_26988 CAAGAATATAAAACAATGTACT +GL349919_26565 AATGACAACAGTTGGCAGCC +GL349829_21990 AGAAAAAAAGCAGTGTACTG +GL349919_26539 ATTTTGGTAGTTTGATAGCT +GL349697_12321 AGAAAAAAAGCAGTGTACTG +GL349919_26587 ATTTTGGTAGTTTGATAGCT +GL349919_26577 ATTTTGGTAGTTTGATAGC +GL349645_5444 AAGGTAACGTTCAAGTCTCTAG +GL349734_15208 TTTGTGTGACAAAAACTCCGGGGA +GL370083_47873 CTTTGAACGCGAGCATTAACAGA +GL349823_21651 TTTTAAATACCCATAACTTGCT +GL349920_26641 TTTATGTGTCACAAAAGACATG +GL349935_26989 TGTGAGGAAGAGGCTGCCT +GL350151_32906 CGGCATTTCTGTTTTCAATCT +GL349919_26526 TTTGGTTTCAGGATTTAGATC +GL350463_38159 AGGAAATCAGTATGGCTTTTAG +GL349806_20754 AAAGTTGACTGTATAGCAATGT +GL353821_45854 CCCTGAATACTGGTCGCA +GL349919_26532 AATGAATTCAGAAATGTTGTCC +GL349959_27749 ATTGATATCACGACGATA +GL349887_25094 ATTTGCTTGAATTTCCCGGGGA +GL350623_40094 TATAAAATACTCATAGCTCGGT +GL349870_24134 AACCACGCTCTGCTACCA +GL349789_19705 TGACGGTTTTAAATATTC +GL351629_44800 TTATATTGGTGATTTAGT +GL350034_30305 ATGCGTGTGTAGTAAGTGACCA +GL349948_27468 TAAGCGCCGGCAGGCAGACGG +GL349950_27537 CACAAGAATAATGCACGTATTTTT +GL349660_8233 TGAGATCATTATAACACTTTAT +GL349765_18133 GTTTGGGATCCGAATGGAAAC +GL350151_32903 TGTGAATTGAACTATTAACAAA +GL350137_32552 TTGGCGGTCCGTCGTGTCGG +GL350151_32892 ATATCACTCTGTATAGGTACC +GL349703_12985 TATTTGTGTGTTCTGTAGTCT +GL349753_16977 TTGGTGTTATTTATTACGGGAC +GL349798_20257 AAGAACCTGAGTTTCCTCGTGA +GL349715_13756 AATAGTAACTGATTCATTT +GL349919_26544 AATGACAACAGTTGGCAGCC +GL349772_18677 AATAGTAACTGATTCATT
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/target.asko.tsv Wed Apr 18 06:26:33 2018 -0400 @@ -0,0 +1,1001 @@ +target targets@mirna targets@mRNA score energy alignment length global coverage seed coverage +api-miR-3015c.rna27318 api-miR-3015c rna27318 146.00 -13.54 17 64.71 88.24 +api-miR-3015c.rna14037 api-miR-3015c rna14037 141.00 -16.27 16 68.75 81.25 +api-miR-3015c.rna15090 api-miR-3015c rna15090 140.00 -11.77 15 66.67 86.67 +api-miR-3015c.rna25490 api-miR-3015c rna25490 145.00 -12.86 18 66.67 88.89 +api-miR-3015c.rna23800 api-miR-3015c rna23800 163.00 -15.96 18 72.22 83.33 +api-miR-3015c.rna28874 api-miR-3015c rna28874 141.00 -13.48 15 80.00 86.67 +api-miR-3015c.rna5471 api-miR-3015c rna5471 145.00 -17.38 18 72.22 83.33 +api-miR-3015c.rna16140 api-miR-3015c rna16140 142.00 -15.04 17 64.71 82.35 +api-miR-3015c.rna16105 api-miR-3015c rna16105 141.00 -16.02 17 70.59 88.24 +api-miR-3015c.rna142 api-miR-3015c rna142 150.00 -17.80 17 70.59 88.24 +api-miR-3015c.rna28003 api-miR-3015c rna28003 146.00 -11.43 15 73.33 80.00 +api-miR-3015c.rna6629 api-miR-3015c rna6629 140.00 -11.26 17 70.59 82.35 +api-miR-3015c.rna31159 api-miR-3015c rna31159 154.00 -15.85 17 76.47 88.24 +api-miR-3015c.rna7103 api-miR-3015c rna7103 154.00 -14.69 19 73.68 73.68 +api-miR-3015c.rna27233 api-miR-3015c rna27233 161.00 -13.68 16 81.25 81.25 +api-miR-3015c.rna25366 api-miR-3015c rna25366 143.00 -11.32 18 66.67 77.78 +api-miR-3015c.rna13454 api-miR-3015c rna13454 144.00 -11.74 17 70.59 88.24 +api-miR-3015c.rna16129 api-miR-3015c rna16129 140.00 -11.44 7 100.00 100.00 +api-miR-3015c.rna21816 api-miR-3015c rna21816 155.00 -16.34 18 77.78 83.33 +api-miR-3015c.rna1484 api-miR-3015c rna1484 150.00 -13.99 17 76.47 82.35 +api-miR-3015c.rna9925 api-miR-3015c rna9925 156.00 -15.91 17 82.35 94.12 +api-miR-3015c.rna22538 api-miR-3015c rna22538 142.00 -16.96 16 68.75 87.50 +api-miR-3015c.rna10626 api-miR-3015c rna10626 143.00 -11.27 14 71.43 92.86 +api-miR-3015c.rna8007 api-miR-3015c rna8007 141.00 -10.21 16 68.75 81.25 +api-miR-3015c.rna13271 api-miR-3015c rna13271 156.00 -13.56 17 76.47 82.35 +api-miR-3015c.rna19614 api-miR-3015c rna19614 150.00 -15.29 9 100.00 100.00 +api-miR-3015c.rna7395 api-miR-3015c rna7395 146.00 -12.72 17 64.71 88.24 +api-miR-3015c.rna24477 api-miR-3015c rna24477 140.00 -12.34 15 66.67 86.67 +api-miR-3015c.rna21283 api-miR-3015c rna21283 169.00 -16.42 18 83.33 88.89 +api-miR-3015c.rna18527 api-miR-3015c rna18527 151.00 -13.33 17 70.59 82.35 +api-miR-3015c.rna3409 api-miR-3015c rna3409 148.00 -13.28 17 76.47 88.24 +api-miR-3015c.rna22964 api-miR-3015c rna22964 143.00 -13.51 18 61.11 83.33 +api-miR-3015c.rna15636 api-miR-3015c rna15636 141.00 -14.21 18 66.67 83.33 +api-miR-3015c.rna15636 api-miR-3015c rna15636 141.00 -12.11 20 65.00 80.00 +api-miR-3015c.rna18504 api-miR-3015c rna18504 151.00 -13.33 17 70.59 82.35 +api-miR-3015c.rna8921 api-miR-3015c rna8921 157.00 -15.36 12 91.67 91.67 +api-miR-3015c.rna10851 api-miR-3015c rna10851 147.00 -12.83 14 78.57 92.86 +api-miR-3015c.rna15581 api-miR-3015c rna15581 147.00 -11.38 14 78.57 92.86 +api-miR-3015c.rna11089 api-miR-3015c rna11089 151.00 -18.87 16 81.25 93.75 +api-miR-3015c.rna19278 api-miR-3015c rna19278 144.00 -11.18 13 76.92 84.62 +api-miR-3015c.rna7087 api-miR-3015c rna7087 157.00 -13.96 18 72.22 83.33 +api-miR-3015c.rna23299 api-miR-3015c rna23299 142.00 -10.62 17 76.47 88.24 +api-miR-3015c.rna14645 api-miR-3015c rna14645 145.00 -11.11 16 68.75 87.50 +api-miR-3015c.rna19270 api-miR-3015c rna19270 140.00 -15.57 14 78.57 85.71 +api-miR-3015c.rna69 api-miR-3015c rna69 148.00 -14.46 13 76.92 92.31 +api-miR-3015c.rna3686 api-miR-3015c rna3686 170.00 -24.54 17 88.24 100.00 +api-miR-3015c.rna2350 api-miR-3015c rna2350 143.00 -14.11 16 75.00 87.50 +api-miR-3015c.rna4825 api-miR-3015c rna4825 146.00 -9.09 17 70.59 82.35 +api-miR-3015c.rna4825 api-miR-3015c rna4825 140.00 -10.23 7 100.00 100.00 +api-miR-3015c.rna22288 api-miR-3015c rna22288 151.00 -19.87 17 76.47 88.24 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146.00 -19.30 23 65.22 65.22 +api-miR-279a.rna17538 api-miR-279a rna17538 140.00 -10.64 7 100.00 100.00 +api-miR-279a.rna13747 api-miR-279a rna13747 173.00 -24.00 18 88.89 88.89 +api-miR-279a.rna21294 api-miR-279a rna21294 151.00 -14.51 12 91.67 91.67 +api-miR-279a.rna7335 api-miR-279a rna7335 141.00 -12.70 8 87.50 100.00 +api-miR-279a.rna13820 api-miR-279a rna13820 160.00 -19.91 17 82.35 82.35 +api-miR-279a.rna25648 api-miR-279a rna25648 155.00 -15.02 18 72.22 72.22 +api-miR-279a.rna16112 api-miR-279a rna16112 140.00 -8.46 7 100.00 100.00 +api-miR-279a.rna16112 api-miR-279a rna16112 140.00 -11.40 7 100.00 100.00 +api-miR-279a.rna28946 api-miR-279a rna28946 143.00 -12.06 18 66.67 77.78 +api-miR-279a.rna8223 api-miR-279a rna8223 149.00 -14.11 18 77.78 83.33 +api-miR-279a.rna16113 api-miR-279a rna16113 140.00 -8.46 7 100.00 100.00 +api-miR-279a.rna16113 api-miR-279a rna16113 140.00 -11.40 7 100.00 100.00 +api-miR-279a.rna14062 api-miR-279a rna14062 145.00 -9.64 8 100.00 100.00 +api-miR-279a.rna24995 api-miR-279a rna24995 149.00 -10.62 12 83.33 83.33 +api-miR-279a.rna28104 api-miR-279a rna28104 159.00 -13.59 14 85.71 85.71 +api-miR-279a.rna9665 api-miR-279a rna9665 145.00 -12.71 8 100.00 100.00 +api-miR-279a.rna9665 api-miR-279a rna9665 142.00 -22.76 19 78.95 84.21 +api-miR-279a.rna26200 api-miR-279a rna26200 143.00 -9.96 17 70.59 70.59 +api-miR-279a.rna8900 api-miR-279a rna8900 145.00 -12.71 8 100.00 100.00 +api-miR-279a.rna24277 api-miR-279a rna24277 151.00 -12.00 14 78.57 78.57 +api-miR-279a.rna181 api-miR-279a rna181 145.00 -12.71 8 100.00 100.00 +api-miR-279a.rna6966 api-miR-279a rna6966 140.00 -10.61 7 100.00 100.00 +api-miR-279a.rna6605 api-miR-279a rna6605 140.00 -10.64 7 100.00 100.00 +api-miR-279a.rna14788 api-miR-279a rna14788 141.00 -8.46 18 66.67 66.67