diff clust_to_gff.xml @ 1:8ef59dde4389 draft default tip

planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/peptimapper commit 040d09319fb0f43fafb1d3ebd99af41bce0f6bfd

--- a/clust_to_gff.xml	Fri Dec 10 10:34:56 2021 +0000
+++ b/clust_to_gff.xml	Thu Jul 18 10:26:15 2024 +0000
@@ -1,7 +1,7 @@
-<tool id="peptimapper_clust_to_gff" name="ClustToGFF" version="2.0">
+<tool id="peptimapper_clust_to_gff" name="ClustToGFF" version="2.1">
     <description>add clusters locations into GFF files to be integrated into a genome viewer</description>
     <requirements>
-        <container type="docker">dockerprotim/peptimapper</container>
+        <container type="docker">dockerprotim/peptimapper@sha256:d3eb807d7d5aa155f7b39d05a47420e0a0a9191d5fa867b6ca1be763f8a23bf1</container>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
 unzip '${gffdir}' -d gff &&
@@ -13,7 +13,7 @@
     ]]></command>
     <inputs>
         <param name="clustersfile" type="data" format="txt" label="Clusters file" help="Clusters file generated by PepMatch" />
-        <param name="gffdir" type="data" label="GFF files repository" help="Zipped repository containing all organism GFF files" />
+        <param name="gffdir" type="data" format="zip" label="GFF files repository" help="Zipped repository containing all organism GFF files" />
     </inputs>
     <outputs>
         <data name="gfffiles" format="zip" label="GFF files including clusters locations" />
@@ -22,7 +22,7 @@
         <test>
             <param name="clustersfile" value="clusttogff/Gamete.5.3.2.5000.clust"/>
             <param name="gffdir" value="clusttogff/gff3_files_repository.zip"/>
-            <output name="output" file="clusttogff/out.zip" compare="sim_size"/>
+            <output name="gfffiles" file="clusttogff/out.zip" compare="sim_size"/>
         </test>
     </tests>
     <help><![CDATA[