Mercurial > repos > genouest > peptimapper_pep_match
changeset 2:bf6acfb148a8 draft default tip
planemo upload for repository https://github.com/genouest/galaxy-tools/tree/master/tools/peptimapper commit 040d09319fb0f43fafb1d3ebd99af41bce0f6bfd
author | genouest |
---|---|
date | Thu, 18 Jul 2024 10:26:43 +0000 (5 months ago) |
parents | c57d7d83f3f8 |
children | |
files | pep_match.xml |
diffstat | 1 files changed, 7 insertions(+), 7 deletions(-) [+] |
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--- a/pep_match.xml Mon Dec 13 14:12:43 2021 +0000 +++ b/pep_match.xml Thu Jul 18 10:26:43 2024 +0000 @@ -1,13 +1,13 @@ -<tool id="peptimapper_pep_match" name="PepMatch" version="2.0"> +<tool id="peptimapper_pep_match" name="PepMatch" version="2.1"> <description>align PSTs on sequence and cluster hits</description> <requirements> - <container type="docker">dockerprotim/peptimapper</container> + <container type="docker">dockerprotim/peptimapper@sha256:d3eb807d7d5aa155f7b39d05a47420e0a0a9191d5fa867b6ca1be763f8a23bf1</container> </requirements> <command detect_errors="exit_code"><![CDATA[ ln -s '$fastafile' 'in.fa' && ln -s '$tagsfile' 'in.tags' && LXRunPepMatch -D $D -t $t -T $T -d $d 'in.fa' 'in.tags' && -mv 'in.tags.in.fa.trans.${D}.hit' ${hitsfile} && +mv 'in.tags.in.fa.trans.${D}.hit' '${hitsfile}' && mv 'in.tags.in.fa.trans.${D}.hit.${t}.${T}.${d}.clust' '${clustersfile}' ]]></command> <inputs> @@ -15,7 +15,7 @@ <param name="fastafile" type="data" format="fasta" label="Chromosome file (Fasta)" help="Chromosome file" /> <param name="D" type="select" label="Mass tolerance" help="uma"> - <option value="0.5" selected="selected">0.5</option> + <option value="0.5" selected="true">0.5</option> <option value="0.25">0.25</option> <option value="0.025">0.025</option> <option value="0.0025">0.0025</option> @@ -23,13 +23,13 @@ </param> <param name="t" type="select" label="Min. hits" help="Minimal hits number per cluster"> - <option value="2" selected="selected">2</option> + <option value="2" selected="true">2</option> <option value="3">3</option> <option value="4">4</option> </param> <param name="T" type="select" label="Min. peptides" help="Minimal peptides number per cluster"> - <option value="2" selected="selected">2</option> + <option value="2" selected="true">2</option> <option value="3">3</option> <option value="4">4</option> </param> @@ -38,7 +38,7 @@ <option value="500">500</option> <option value="1000">1000</option> <option value="2000">2000</option> - <option value="5000" selected="selected">5000</option> + <option value="5000" selected="true">5000</option> <option value="10000">10000</option> <option value="15000">15000</option> <option value="20000">20000</option>