Mercurial > repos > george-weingart > lefse
diff test-data/lefse_input @ 0:e7cd19afda2e draft
Lefse
| author | george-weingart |
|---|---|
| date | Tue, 13 May 2014 21:57:00 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/lefse_input Tue May 13 21:57:00 2014 -0400 @@ -0,0 +1,340 @@ +class truc truc truc truc truc truc truc truc truc truc truc truc truc truc truc truc truc truc truc truc rag2 rag2 rag2 rag2 rag2 rag2 rag2 rag2 rag2 rag2 +Archaea 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +Archaea|Crenarchaeota 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +Archaea|Crenarchaeota|Thermoprotei 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +Archaea|Crenarchaeota|Thermoprotei|Desulfurococcales 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +Archaea|Crenarchaeota|Thermoprotei|Sulfolobales 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 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0.0 0.0 0.0 0.0 +Bacteria|Firmicutes|Bacilli|Lactobacillales|Enterococcaceae|Melissococcus 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +Bacteria|Firmicutes|Bacilli|Lactobacillales|Enterococcaceae|Pilibacter 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +Bacteria|Firmicutes|Bacilli|Lactobacillales|Enterococcaceae|Tetragenococcus 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +Bacteria|Firmicutes|Bacilli|Lactobacillales|Enterococcaceae|Vagococcus 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +Bacteria|Firmicutes|Bacilli|Lactobacillales|Lactobacillaceae 0.53037608486 1.72143974961 0.695849178736 15.0365471632 2.47505755948 1.17782614262 0.281246484419 2.28169014085 17.2100075815 0.965488907149 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0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +Bacteria|Firmicutes|Erysipelotrichi|Erysipelotrichales|Erysipelotrichaceae|Turicibacter 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +Bacteria|Fusobacteria 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +Bacteria|Fusobacteria|Fusobacteria 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +Bacteria|Fusobacteria|Fusobacteria|Fusobacteriales 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +Bacteria|Fusobacteria|Fusobacteria|Fusobacteriales|Leptotrichiaceae 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +Bacteria|Proteobacteria 5.85824493732 3.59937402191 5.51015454325 3.97957999768 2.50383729854 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0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +Bacteria|Proteobacteria|Deltaproteobacteria|Desulfobacterales|Desulfobulbaceae 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +Bacteria|Proteobacteria|Deltaproteobacteria|Desulfovibrionales 0.602700096432 0.312989045383 0.598753944494 0.232045480914 0.566001534919 0.601715529382 0.607492406345 0.352112676056 0.576194086429 0.267050123254 0.348507950338 0.494958753437 0.509539044911 0.693568726356 0.531497778165 0.672546857773 0.94583831143 0.882708585248 0.47302829073 0.596529284165 0.93728862692 0.435919790759 0.46900190532 0.599903241413 0.267578415341 0.362231345086 0.819578827547 0.286635614475 0.440970134295 0.676515256109 +Bacteria|Proteobacteria|Deltaproteobacteria|Desulfovibrionales|Desulfohalobiaceae 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 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8.64788732394 2.7899924185 4.25225965489 3.85536920061 1.55820348304 4.49105344235 5.88902900378 3.31968284395 5.39140022051 2.50896057348 2.00725513906 3.00191030656 3.87201735358 4.36757174606 3.34786399303 2.05188333578 6.13449443638 1.12977553144 0.869355228206 4.81502561184 4.28759106652 3.46762878332 3.52064061853 +Bacteria|Proteobacteria|Epsilonproteobacteria|Campylobacterales 4.53230472517 3.17879499218 4.62011489603 2.22763661678 1.35264773599 2.30444245295 3.84745190685 8.64788732394 2.7899924185 4.25225965489 3.85536920061 1.55820348304 4.49105344235 5.86380832282 3.31968284395 5.39140022051 2.49900438072 2.00725513906 3.00191030656 3.85032537961 4.36757174606 3.34786399303 2.05188333578 6.13449443638 1.12977553144 0.77276020285 4.81502561184 4.28759106652 3.46762878332 3.52064061853 +Bacteria|Proteobacteria|Epsilonproteobacteria|Campylobacterales|Helicobacteraceae 4.50819672131 3.16901408451 4.61202362651 2.22763661678 1.33346124328 2.30444245295 3.84745190685 8.60563380282 2.7899924185 4.25225965489 3.85536920061 1.55820348304 4.49105344235 5.86380832282 3.31968284395 5.39140022051 2.48904818797 2.00725513906 3.00191030656 3.83947939262 4.36757174606 3.34786399303 2.05188333578 6.11514271892 1.12977553144 0.748611446511 4.81502561184 4.27564791592 3.46762878332 3.52064061853 +Bacteria|Proteobacteria|Epsilonproteobacteria|Campylobacterales|Helicobacteraceae|Helicobacter 2.12150433944 2.10289514867 3.84335302209 1.54310244808 0.815425940138 1.65151709128 2.92496343796 5.35211267606 1.3040181956 2.95809367297 2.63559137443 0.806599450046 3.3060789193 3.49306431274 2.64877581249 3.71554575524 1.43369175627 1.33010882709 2.33785135996 2.36442516269 3.43994588849 2.26678291194 1.15784845376 4.51862602806 0.728407908429 0.362231345086 3.09618668184 3.069389705 2.10463018641 1.71199779097 +Bacteria|Proteobacteria|Epsilonproteobacteria|Campylobacterales|Helicobacteraceae|Sulfurimonas 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +Bacteria|Proteobacteria|Epsilonproteobacteria|Campylobacterales|Helicobacteraceae|Wolinella 0.192864030858 0.0391236306729 0.0161825390404 0.0464090961829 0.0 0.0128024580719 0.0224997187535 0.253521126761 0.0454890068234 0.0410846343468 0.0 0.0 0.0355492356914 0.0756620428752 0.0 0.0330760749724 0.0497809637595 0.0120918984281 0.0181933957973 0.130151843818 0.0 0.052310374891 0.0 0.0677310111272 0.0 0.169041294373 0.0341491178145 0.0 0.0801763880537 0.165677205578 +Bacteria|Proteobacteria|Gammaproteobacteria 0.0723240115718 0.0 0.0161825390404 0.0348068221371 0.0863392171911 3.0597874792 0.0 0.112676056338 0.0454890068234 0.0 0.0435634937922 0.0183318056829 0.023699490461 0.0126103404792 0.0174261566611 0.0551267916207 0.0497809637595 0.0 0.081870281088 0.0216919739696 0.0096627693497 0.0 0.0 0.0 0.0 0.024148756339 0.0341491178145 0.179147259047 0.0 0.0 +Bacteria|Proteobacteria|Gammaproteobacteria|Aeromonadales 0.0 0.0 0.0 0.0 0.0 0.0128024580719 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +Bacteria|Proteobacteria|Gammaproteobacteria|Aeromonadales|Aeromonadaceae 0.0 0.0 0.0 0.0 0.0 0.0128024580719 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +Bacteria|Proteobacteria|Gammaproteobacteria|Aeromonadales|Aeromonadaceae|Aeromonas 0.0 0.0 0.0 0.0 0.0 0.0128024580719 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +Bacteria|Proteobacteria|Gammaproteobacteria|Chromatiales 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +Bacteria|Proteobacteria|Gammaproteobacteria|Enterobacteriales 0.0241080038573 0.0 0.0161825390404 0.0348068221371 0.0863392171911 3.00857764691 0.0 0.112676056338 0.0454890068234 0.0 0.0435634937922 0.0183318056829 0.023699490461 0.0126103404792 0.0174261566611 0.0551267916207 0.0497809637595 0.0 0.081870281088 0.0108459869848 0.0096627693497 0.0 0.0 0.0 0.0 0.024148756339 0.0341491178145 0.179147259047 0.0 0.0 +Bacteria|Proteobacteria|Gammaproteobacteria|Enterobacteriales|Enterobacteriaceae 0.0241080038573 0.0 0.0161825390404 0.0348068221371 0.0863392171911 3.00857764691 0.0 0.112676056338 0.0454890068234 0.0 0.0435634937922 0.0183318056829 0.023699490461 0.0126103404792 0.0174261566611 0.0551267916207 0.0497809637595 0.0 0.081870281088 0.0108459869848 0.0096627693497 0.0 0.0 0.0 0.0 0.024148756339 0.0341491178145 0.179147259047 0.0 0.0 +Bacteria|Proteobacteria|Gammaproteobacteria|Enterobacteriales|Enterobacteriaceae|Escherichia/Shigella 0.0241080038573 0.0 0.0161825390404 0.0348068221371 0.0767459708365 2.71412111125 0.0 0.112676056338 0.0454890068234 0.0 0.0217817468961 0.0183318056829 0.023699490461 0.0126103404792 0.0174261566611 0.0551267916207 0.0298685782557 0.0 0.0727735831893 0.0108459869848 0.0 0.0 0.0 0.0 0.0 0.0 0.022766078543 0.167204108444 0.0 0.0 +Bacteria|Proteobacteria|Gammaproteobacteria|Enterobacteriales|Enterobacteriaceae|Klebsiella 0.0 0.0 0.0 0.0 0.0 0.0128024580719 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +Bacteria|Proteobacteria|Gammaproteobacteria|Enterobacteriales|Enterobacteriaceae|Kluyvera 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +Bacteria|Proteobacteria|Gammaproteobacteria|Enterobacteriales|Enterobacteriaceae|Plesiomonas 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +Bacteria|Proteobacteria|Gammaproteobacteria|Enterobacteriales|Enterobacteriaceae|Rahnella 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +Bacteria|Proteobacteria|Gammaproteobacteria|Enterobacteriales|Enterobacteriaceae|Trabulsiella 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +Bacteria|Proteobacteria|Gammaproteobacteria|Oceanospirillales 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +Bacteria|Proteobacteria|Gammaproteobacteria|Oceanospirillales|Hahellaceae 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +Bacteria|Proteobacteria|Gammaproteobacteria|Oceanospirillales|Hahellaceae|Halospina 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +Bacteria|Proteobacteria|Gammaproteobacteria|Oceanospirillales|Oceanospirillaceae 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +Bacteria|Proteobacteria|Gammaproteobacteria|Oceanospirillales|Oceanospirillaceae|Oceanobacter 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +Bacteria|Proteobacteria|Gammaproteobacteria|Pasteurellales 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +Bacteria|Proteobacteria|Gammaproteobacteria|Pasteurellales|Pasteurellaceae 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +Bacteria|Proteobacteria|Gammaproteobacteria|Pseudomonadales 0.0 0.0 0.0 0.0 0.0 0.0384073742158 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0108459869848 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +Bacteria|Proteobacteria|Gammaproteobacteria|Pseudomonadales|Moraxellaceae 0.0 0.0 0.0 0.0 0.0 0.0128024580719 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +Bacteria|Proteobacteria|Gammaproteobacteria|Pseudomonadales|Moraxellaceae|Acinetobacter 0.0 0.0 0.0 0.0 0.0 0.0128024580719 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +Bacteria|Proteobacteria|Gammaproteobacteria|Pseudomonadales|Pseudomonadaceae 0.0 0.0 0.0 0.0 0.0 0.0256049161439 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0108459869848 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +Bacteria|Proteobacteria|Gammaproteobacteria|Pseudomonadales|Pseudomonadaceae|Pseudomonas 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +Bacteria|Proteobacteria|Gammaproteobacteria|Thiotrichales 0.0482160077146 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +Bacteria|Proteobacteria|Gammaproteobacteria|Thiotrichales|Thiotrichaceae 0.0482160077146 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +Bacteria|Proteobacteria|Gammaproteobacteria|Thiotrichales|Thiotrichaceae|Thiothrix 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