Mercurial > repos > george-weingart > maaslin

view maaslin-4450aa4ecc84/MaAsLin_galaxy_ReadMe.txt @ 1:a87d5a5f2776

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded the version running on the prod server
author george-weingart
date Sun, 08 Feb 2015 23:08:38 -0500
parents
children
line wrap: on
line source

Installation instructions for maaslin in a galaxy environment.
These instructions require the Mercurial versioning system, galaxy, and an internet connection.

1. In the  "galaxy-dist/tools" directory install maaslin by typing in a terminal:
hg clone https://bitbucket.org/biobakery/maaslin

2. Update member tool_conf.xml  in the galaxy directory adding the following: 
  <section name="maaslin" id="maaslin">
    <tool file="maaslin/galaxy/maaslin.xml"/>
  </section>

3. Update member datatypes_conf.xml  in the galaxy directory adding the following:
	<datatype extension="maaslin" type="galaxy.datatypes.data:Text" subclass="true" display_in_upload="true"/>

4. Recycle galaxy