Mercurial > repos > george-weingart > metaphlan
comparison metaphlan.xml @ 2:90de8f4531b9 draft default tip
Added requirements in the metaphlan.xml
| author | george-weingart |
|---|---|
| date | Mon, 19 May 2014 15:59:46 -0400 |
| parents | 921c5be02e81 |
| children |
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| 1:eb47f6bbd2e5 | 2:90de8f4531b9 |
|---|---|
| 22 </param> | 22 </param> |
| 23 </inputs> | 23 </inputs> |
| 24 <outputs> | 24 <outputs> |
| 25 <data format="tabular" name="output" /> | 25 <data format="tabular" name="output" /> |
| 26 </outputs> | 26 </outputs> |
| 27 <tests> | 27 <requirements> |
| 28 <requirement type="package" version="2.1.0">bowtie2</requirement> | |
| 29 <requirement type="package" version="1.7">numpy</requirement> | |
| 30 </requirements> | |
| 31 <tests> | |
| 28 <test> | 32 <test> |
| 29 <param name="input" value="metaphlan_input" ftype="fasta" /> | 33 <param name="input" value="metaphlan_input" ftype="fasta" /> |
| 30 <param name="PresetsForBowtie2" value="sensitive" /> | 34 <param name="PresetsForBowtie2" value="sensitive" /> |
| 31 <output name="output" file="metaphlan_output" /> | 35 <output name="output" file="metaphlan_output" /> |
| 32 <assert_contents> | 36 <assert_contents> |
| 33 <has_text text="k__Bacteria" /> | 37 <has_text text="k__Bacteria" /> |
| 34 <has_text text="k__Bacteria|p__Actinobacteria" /> | 38 <has_text text="k__Bacteria|p__Actinobacteria" /> |
| 35 </assert_contents> | 39 </assert_contents> |
| 36 </test> | 40 </test> |
| 37 </tests> | 41 </tests> |
| 38 | 42 |
| 39 | 43 |
| 40 | 44 |
| 41 <help> | 45 <help> |
| 42 | 46 |