Mercurial > repos > george-weingart > metaphlan
view tool_dependencies.xml @ 2:90de8f4531b9 draft default tip
Added requirements in the metaphlan.xml
author | george-weingart |
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date | Mon, 19 May 2014 15:59:46 -0400 |
parents | eb47f6bbd2e5 |
children |
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<?xml version="1.0"?> <tool_dependency> <package name="metaphlan" version="1.7.0"> <install version="1.0"> <actions> <action type="shell_command">hg clone https://bitbucket.org/nsegata/metaphlan</action> <action type="move_directory_files"> <source_directory>.</source_directory> <destination_directory>$INSTALL_DIR</destination_directory> </action> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> </action> <action type="set_environment"> <environment_variable name="METAPHLAN_PATH" action="set_to">$INSTALL_DIR</environment_variable> </action> </actions> </install> <readme> These links provide information for the metaphlan package: http://huttenhower.sph.harvard.edu/metaphlan https://groups.google.com/forum/#!forum/metaphlan-users </readme> </package> <package name="numpy" version="1.7"> <repository changeset_revision="0c288abd2a1e" name="package_numpy_1_7" owner="devteam" prior_installation_required="False" toolshed="http://toolshed.g2.bx.psu.edu" /> </package> <package name="bowtie2" version="2.1.0"> <repository changeset_revision="017a00c265f1" name="package_bowtie2_2_1_0" owner="devteam" prior_installation_required="False" toolshed="http://toolshed.g2.bx.psu.edu" /> </package> </tool_dependency>