diff test-data/merlin.gff @ 10:a46a509386d3 draft

"planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 08015be1ee8a784e0619f961aaa724857debfd6f"
author gga
date Mon, 02 Dec 2019 05:50:13 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/merlin.gff	Mon Dec 02 05:50:13 2019 -0500
@@ -0,0 +1,28 @@
+##gff-version 3
+##sequence-region Merlin 1 172788
+Merlin	GeneMark.hmm	gene	2	691	-856.563659	+	.	ID=Merlin_1;seqid=Merlin
+Merlin	GeneMark.hmm	mRNA	2	691	.	+	.	ID=Merlin_1_mRNA;Parent=Merlin_1;seqid=Merlin;color=#00ff00
+Merlin	GeneMark.hmm	exon	2	691	.	+	.	ID=Merlin_1_exon;Parent=Merlin_1_mRNA;seqid=Merlin
+Merlin	GeneMark.hmm	CDS	2	691	.	+	0	ID=Merlin_1_CDS;Parent=Merlin_1_exon;seqid=Merlin
+Merlin	GeneMark.hmm	gene	752	1039	-339.046618	+	.	ID=Merlin_2;seqid=Merlin
+Merlin	GeneMark.hmm	mRNA	752	1039	.	+	.	ID=Merlin_2_mRNA;Parent=Merlin_2;seqid=Merlin;Name=mrna-name
+Merlin	GeneMark.hmm	exon	752	1039	.	+	.	ID=Merlin_2_exon;Parent=Merlin_2_mRNA;seqid=Merlin
+Merlin	GeneMark.hmm	CDS	852	939	.	+	0	ID=Merlin_2_CDS;Parent=Merlin_2_exon;seqid=Merlin
+Merlin	GeneMark.hmm	gene	1067	2011	-1229.683915	-	.	ID=Merlin_3;seqid=Merlin
+Merlin	GeneMark.hmm	mRNA	1067	2011	.	-	.	ID=Merlin_3_mRNA;Parent=Merlin_3;seqid=Merlin
+Merlin	GeneMark.hmm	exon	1067	2011	.	-	.	ID=Merlin_3_exon;Parent=Merlin_3_mRNA;seqid=Merlin
+Merlin	GeneMark.hmm	CDS	1367	1811	.	-	0	ID=Merlin_3_CDS;Parent=Merlin_3_exon;seqid=Merlin
+Merlin	GeneMark.hmm	gene	2011	3066	-1335.034872	-	.	ID=Merlin_4;seqid=Merlin
+Merlin	GeneMark.hmm	mRNA	2011	3066	.	-	.	ID=Merlin_4_mRNA;Parent=Merlin_4;seqid=Merlin
+Merlin	GeneMark.hmm	exon	2011	3066	.	-	.	ID=Merlin_4_exon;Parent=Merlin_4_mRNA;seqid=Merlin
+Merlin	GeneMark.hmm	CDS	2011	3066	.	-	0	ID=Merlin_4_CDS;Parent=Merlin_4_exon;seqid=Merlin
+Merlin	GeneMark.hmm	gene	3066	4796	-2177.374893	-	.	ID=Merlin_5;seqid=Merlin;Name=multiexongene
+Merlin	GeneMark.hmm	mRNA	3066	4796	.	-	.	ID=Merlin_5_mRNA;Parent=Merlin_5;seqid=Merlin
+Merlin	GeneMark.hmm	exon	3066	4296	.	-	.	ID=Merlin_5_exon;Parent=Merlin_5_mRNA;seqid=Merlin
+Merlin	GeneMark.hmm	CDS	3066	4296	.	-	0	ID=Merlin_5_CDS;Parent=Merlin_5_exon;seqid=Merlin
+Merlin	GeneMark.hmm	exon	4366	4796	.	-	.	ID=Merlin_5_exon2;Parent=Merlin_5_mRNA;seqid=Merlin
+Merlin	GeneMark.hmm	CDS	4366	4796	.	-	0	ID=Merlin_5_CDS2;Parent=Merlin_5_exon2;seqid=Merlin
+Merlin	GeneMark.hmm	gene	5011	6066	-1335.034872	-	.	ID=Merlin_42;seqid=Merlin;Name=cds-not-under-exon
+Merlin	GeneMark.hmm	mRNA	5011	6066	.	-	.	ID=Merlin_42_mRNA;Parent=Merlin_42;seqid=Merlin
+Merlin	GeneMark.hmm	exon	5011	6066	.	-	.	ID=Merlin_42_exon;Parent=Merlin_42_mRNA;seqid=Merlin
+Merlin	GeneMark.hmm	CDS	5011	6066	.	-	0	ID=Merlin_42_CDS;Parent=Merlin_42_mRNA;seqid=Merlin