Mercurial > repos > gga > apollo_create_account
diff test-data/load_gff3/output.txt @ 13:d6f1caebd5a4 draft
"planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 7bf18c69becc57152efdadedf7ebd0bcfa382a15"
| author | gga |
|---|---|
| date | Mon, 29 Jun 2020 09:17:30 -0400 |
| parents | |
| children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/load_gff3/output.txt Mon Jun 29 09:17:30 2020 -0400 @@ -0,0 +1,646 @@ +{ + "Merlin_1_mRNA": { + "owner": "admin@local.host", + "parent_name": "Merlin_1_mRNA", + "uniquename": "d33cb6e8-0809-442f-84ff-015aff163846", + "type": { + "cv": { + "name": "sequence" + }, + "name": "mRNA" + }, + "parent_type": { + "cv": { + "name": "sequence" + }, + "name": "gene" + }, + "date_creation": 1593424039041, + "sequence": "Merlin", + "children": [ + { + "owner": "None", + "parent_name": "Merlin_1_mRNA-00001", + "uniquename": "d33cb6e8-0809-442f-84ff-015aff163846-CDS", + "type": { + "cv": { + "name": "sequence" + }, + "name": "CDS" + }, + "parent_type": { + "cv": { + "name": "sequence" + }, + "name": "mRNA" + }, + "date_creation": 1593424039071, + "sequence": "Merlin", + "parent_id": "d33cb6e8-0809-442f-84ff-015aff163846", + "name": "d33cb6e8-0809-442f-84ff-015aff163846-CDS", + "location": { + "strand": 1, + "is_fmin_partial": true, + "id": 459, + "fmin": 1, + "fmax": 691 + }, + "id": 458, + "properties": [], + "date_last_modified": 1593424039095 + }, + { + "owner": "None", + "parent_name": "Merlin_1_mRNA-00001", + "uniquename": "0356ce47-8746-4557-9f45-2b08625ebc63", + "type": { + "cv": { + "name": "sequence" + }, + "name": "exon" + }, + "parent_type": { + "cv": { + "name": "sequence" + }, + "name": "mRNA" + }, + "date_creation": 1593424039029, + "sequence": "Merlin", + "parent_id": "d33cb6e8-0809-442f-84ff-015aff163846", + "name": "0356ce47-8746-4557-9f45-2b08625ebc63", + "location": { + "strand": 1, + "id": 455, + "fmin": 1, + "fmax": 691 + }, + "id": 454, + "properties": [], + "date_last_modified": 1593424039078 + } + ], + "parent_id": "436dee83-9e76-44c3-94a8-37ac15c57e8e", + "name": "Merlin_1_mRNA-00001", + "location": { + "strand": 1, + "id": 453, + "fmin": 1, + "fmax": 691 + }, + "id": 452, + "properties": [], + "date_last_modified": 1593424039249 + }, + "Merlin_2_mRNA": { + "owner": "admin@local.host", + "parent_name": "mrna-name", + "uniquename": "d5d0e6eb-458d-4402-b2ee-c19e4c1e0666", + "type": { + "cv": { + "name": "sequence" + }, + "name": "mRNA" + }, + "parent_type": { + "cv": { + "name": "sequence" + }, + "name": "gene" + }, + "date_creation": 1593424039315, + "sequence": "Merlin", + "children": [ + { + "owner": "None", + "parent_name": "mrna-name-00001", + "uniquename": "d5d0e6eb-458d-4402-b2ee-c19e4c1e0666-CDS", + "type": { + "cv": { + "name": "sequence" + }, + "name": "CDS" + }, + "parent_type": { + "cv": { + "name": "sequence" + }, + "name": "mRNA" + }, + "date_creation": 1593424039321, + "sequence": "Merlin", + "parent_id": "d5d0e6eb-458d-4402-b2ee-c19e4c1e0666", + "name": "d5d0e6eb-458d-4402-b2ee-c19e4c1e0666-CDS", + "location": { + "strand": 1, + "id": 471, + "fmin": 751, + "fmax": 1039 + }, + "id": 470, + "properties": [], + "date_last_modified": 1593424039334 + }, + { + "owner": "None", + "parent_name": "mrna-name-00001", + "uniquename": "46e2b6ce-5cf2-4472-b858-9535a374f535", + "type": { + "cv": { + "name": "sequence" + }, + "name": "exon" + }, + "parent_type": { + "cv": { + "name": "sequence" + }, + "name": "mRNA" + }, + "date_creation": 1593424039312, + "sequence": "Merlin", + "parent_id": "d5d0e6eb-458d-4402-b2ee-c19e4c1e0666", + "name": "46e2b6ce-5cf2-4472-b858-9535a374f535", + "location": { + "strand": 1, + "id": 467, + "fmin": 751, + "fmax": 1039 + }, + "id": 466, + "properties": [], + "date_last_modified": 1593424039328 + } + ], + "parent_id": "9d2661e7-c095-426e-a9ce-0e0f9d68c1ca", + "name": "mrna-name-00001", + "location": { + "strand": 1, + "id": 465, + "fmin": 751, + "fmax": 1039 + }, + "id": 464, + "properties": [], + "date_last_modified": 1593424039356 + }, + "Merlin_3_mRNA": { + "owner": "admin@local.host", + "parent_name": "Merlin_3_mRNA", + "uniquename": "c1e84840-7b7e-4c45-b044-e6ffaa89cb5d", + "type": { + "cv": { + "name": "sequence" + }, + "name": "mRNA" + }, + "parent_type": { + "cv": { + "name": "sequence" + }, + "name": "gene" + }, + "date_creation": 1593424039392, + "sequence": "Merlin", + "children": [ + { + "owner": "None", + "parent_name": "Merlin_3_mRNA-00001", + "uniquename": "3fc60774-85c1-4cbd-aca3-1a1a74a2cbf3", + "type": { + "cv": { + "name": "sequence" + }, + "name": "exon" + }, + "parent_type": { + "cv": { + "name": "sequence" + }, + "name": "mRNA" + }, + "date_creation": 1593424039390, + "sequence": "Merlin", + "parent_id": "c1e84840-7b7e-4c45-b044-e6ffaa89cb5d", + "name": "3fc60774-85c1-4cbd-aca3-1a1a74a2cbf3", + "location": { + "strand": -1, + "id": 479, + "fmin": 1066, + "fmax": 2011 + }, + "id": 478, + "properties": [], + "date_last_modified": 1593424039410 + }, + { + "owner": "None", + "parent_name": "Merlin_3_mRNA-00001", + "uniquename": "c1e84840-7b7e-4c45-b044-e6ffaa89cb5d-CDS", + "type": { + "cv": { + "name": "sequence" + }, + "name": "CDS" + }, + "parent_type": { + "cv": { + "name": "sequence" + }, + "name": "mRNA" + }, + "date_creation": 1593424039403, + "sequence": "Merlin", + "parent_id": "c1e84840-7b7e-4c45-b044-e6ffaa89cb5d", + "name": "c1e84840-7b7e-4c45-b044-e6ffaa89cb5d-CDS", + "location": { + "strand": -1, + "id": 483, + "fmin": 1066, + "fmax": 2011 + }, + "id": 482, + "properties": [], + "date_last_modified": 1593424039416 + } + ], + "parent_id": "6a3cfa63-9957-44c2-855e-8914d14c6773", + "name": "Merlin_3_mRNA-00001", + "location": { + "strand": -1, + "id": 477, + "fmin": 1066, + "fmax": 2011 + }, + "id": 476, + "properties": [], + "date_last_modified": 1593424039439 + }, + "Merlin_4_mRNA": { + "owner": "admin@local.host", + "parent_name": "Merlin_4_mRNA", + "uniquename": "4b3f4451-6feb-4a89-85ee-002c03679c4b", + "type": { + "cv": { + "name": "sequence" + }, + "name": "mRNA" + }, + "parent_type": { + "cv": { + "name": "sequence" + }, + "name": "gene" + }, + "date_creation": 1593424039555, + "sequence": "Merlin", + "children": [ + { + "owner": "None", + "parent_name": "Merlin_4_mRNA-00001", + "uniquename": "4b3f4451-6feb-4a89-85ee-002c03679c4b-CDS", + "type": { + "cv": { + "name": "sequence" + }, + "name": "CDS" + }, + "parent_type": { + "cv": { + "name": "sequence" + }, + "name": "mRNA" + }, + "date_creation": 1593424039563, + "sequence": "Merlin", + "parent_id": "4b3f4451-6feb-4a89-85ee-002c03679c4b", + "name": "4b3f4451-6feb-4a89-85ee-002c03679c4b-CDS", + "location": { + "strand": -1, + "id": 503, + "fmin": 2010, + "fmax": 3066 + }, + "id": 502, + "properties": [], + "date_last_modified": 1593424039575 + }, + { + "owner": "None", + "parent_name": "Merlin_4_mRNA-00001", + "uniquename": "4322d1af-5aa0-4777-9bd2-20d87b807d1e", + "type": { + "cv": { + "name": "sequence" + }, + "name": "exon" + }, + "parent_type": { + "cv": { + "name": "sequence" + }, + "name": "mRNA" + }, + "date_creation": 1593424039553, + "sequence": "Merlin", + "parent_id": "4b3f4451-6feb-4a89-85ee-002c03679c4b", + "name": "4322d1af-5aa0-4777-9bd2-20d87b807d1e", + "location": { + "strand": -1, + "id": 499, + "fmin": 2010, + "fmax": 3066 + }, + "id": 498, + "properties": [], + "date_last_modified": 1593424039569 + } + ], + "parent_id": "71eafcd2-8ef6-4a71-88c2-bcac2f342e28", + "name": "Merlin_4_mRNA-00001", + "location": { + "strand": -1, + "id": 497, + "fmin": 2010, + "fmax": 3066 + }, + "id": 496, + "properties": [], + "date_last_modified": 1593424039596 + }, + "Merlin_5_mRNA": { + "owner": "admin@local.host", + "parent_name": "Merlin_5_mRNA", + "uniquename": "19b80336-a138-4276-96e1-116a7787afe8", + "type": { + "cv": { + "name": "sequence" + }, + "name": "mRNA" + }, + "parent_type": { + "cv": { + "name": "sequence" + }, + "name": "gene" + }, + "date_creation": 1593424039700, + "sequence": "Merlin", + "children": [ + { + "owner": "None", + "parent_name": "Merlin_5_mRNA-00001", + "uniquename": "19b80336-a138-4276-96e1-116a7787afe8-non_canonical_five_prime_splice_site-4363", + "type": { + "cv": { + "name": "sequence" + }, + "name": "non_canonical_five_prime_splice_site" + }, + "parent_type": { + "cv": { + "name": "sequence" + }, + "name": "mRNA" + }, + "date_creation": 1593424039756, + "sequence": "Merlin", + "parent_id": "19b80336-a138-4276-96e1-116a7787afe8", + "name": "19b80336-a138-4276-96e1-116a7787afe8-non_canonical_five_prime_splice_site-4363", + "location": { + "strand": -1, + "id": 532, + "fmin": 4363, + "fmax": 4363 + }, + "id": 531, + "properties": [], + "date_last_modified": 1593424039803 + }, + { + "owner": "None", + "parent_name": "Merlin_5_mRNA-00001", + "uniquename": "19b80336-a138-4276-96e1-116a7787afe8-non_canonical_three_prime_splice_site-4296", + "type": { + "cv": { + "name": "sequence" + }, + "name": "non_canonical_three_prime_splice_site" + }, + "parent_type": { + "cv": { + "name": "sequence" + }, + "name": "mRNA" + }, + "date_creation": 1593424039767, + "sequence": "Merlin", + "parent_id": "19b80336-a138-4276-96e1-116a7787afe8", + "name": "19b80336-a138-4276-96e1-116a7787afe8-non_canonical_three_prime_splice_site-4296", + "location": { + "strand": -1, + "id": 535, + "fmin": 4296, + "fmax": 4296 + }, + "id": 534, + "properties": [], + "date_last_modified": 1593424039804 + }, + { + "owner": "None", + "parent_name": "Merlin_5_mRNA-00001", + "uniquename": "f192c0c8-c043-474a-9cba-fe593340a28f", + "type": { + "cv": { + "name": "sequence" + }, + "name": "exon" + }, + "parent_type": { + "cv": { + "name": "sequence" + }, + "name": "mRNA" + }, + "date_creation": 1593424039691, + "sequence": "Merlin", + "parent_id": "19b80336-a138-4276-96e1-116a7787afe8", + "name": "f192c0c8-c043-474a-9cba-fe593340a28f", + "location": { + "strand": -1, + "id": 522, + "fmin": 3065, + "fmax": 4296 + }, + "id": 521, + "properties": [], + "date_last_modified": 1593424039696 + }, + { + "owner": "None", + "parent_name": "Merlin_5_mRNA-00001", + "uniquename": "31a23617-42b1-4bf1-a65d-45eccdd17e8e", + "type": { + "cv": { + "name": "sequence" + }, + "name": "exon" + }, + "parent_type": { + "cv": { + "name": "sequence" + }, + "name": "mRNA" + }, + "date_creation": 1593424039699, + "sequence": "Merlin", + "parent_id": "19b80336-a138-4276-96e1-116a7787afe8", + "name": "31a23617-42b1-4bf1-a65d-45eccdd17e8e", + "location": { + "strand": -1, + "id": 525, + "fmin": 4365, + "fmax": 4796 + }, + "id": 524, + "properties": [], + "date_last_modified": 1593424039716 + }, + { + "owner": "None", + "parent_name": "Merlin_5_mRNA-00001", + "uniquename": "19b80336-a138-4276-96e1-116a7787afe8-CDS", + "type": { + "cv": { + "name": "sequence" + }, + "name": "CDS" + }, + "parent_type": { + "cv": { + "name": "sequence" + }, + "name": "mRNA" + }, + "date_creation": 1593424039710, + "sequence": "Merlin", + "parent_id": "19b80336-a138-4276-96e1-116a7787afe8", + "name": "19b80336-a138-4276-96e1-116a7787afe8-CDS", + "location": { + "strand": -1, + "id": 529, + "fmin": 3065, + "fmax": 4796 + }, + "id": 528, + "properties": [], + "date_last_modified": 1593424039722 + } + ], + "parent_id": "f380f7b1-2b7d-45cd-8d0b-2519b1b0afee", + "name": "Merlin_5_mRNA-00001", + "location": { + "strand": -1, + "id": 520, + "fmin": 3065, + "fmax": 4796 + }, + "id": 519, + "properties": [], + "date_last_modified": 1593424039810 + }, + "Merlin_42_mRNA": { + "owner": "admin@local.host", + "parent_name": "Merlin_42_mRNA", + "uniquename": "0e34cfa5-6f64-4111-9c2f-37655f6f1b92", + "type": { + "cv": { + "name": "sequence" + }, + "name": "mRNA" + }, + "parent_type": { + "cv": { + "name": "sequence" + }, + "name": "gene" + }, + "date_creation": 1593424039850, + "sequence": "Merlin", + "children": [ + { + "owner": "None", + "parent_name": "Merlin_42_mRNA-00001", + "uniquename": "6596e6e2-a894-4c0b-98c1-298c65f0c021", + "type": { + "cv": { + "name": "sequence" + }, + "name": "exon" + }, + "parent_type": { + "cv": { + "name": "sequence" + }, + "name": "mRNA" + }, + "date_creation": 1593424039841, + "sequence": "Merlin", + "parent_id": "0e34cfa5-6f64-4111-9c2f-37655f6f1b92", + "name": "6596e6e2-a894-4c0b-98c1-298c65f0c021", + "location": { + "strand": -1, + "id": 543, + "fmin": 5010, + "fmax": 6066 + }, + "id": 542, + "properties": [], + "date_last_modified": 1593424039847 + }, + { + "owner": "None", + "parent_name": "Merlin_42_mRNA-00001", + "uniquename": "a42c4166-5211-49b9-9110-e5fd41c9d2cb", + "type": { + "cv": { + "name": "sequence" + }, + "name": "CDS" + }, + "parent_type": { + "cv": { + "name": "sequence" + }, + "name": "mRNA" + }, + "date_creation": 1593424039849, + "sequence": "Merlin", + "parent_id": "0e34cfa5-6f64-4111-9c2f-37655f6f1b92", + "name": "a42c4166-5211-49b9-9110-e5fd41c9d2cb", + "location": { + "strand": -1, + "id": 546, + "fmin": 5288, + "fmax": 6065, + "is_fmax_partial": true + }, + "id": 545, + "properties": [], + "date_last_modified": 1593424039867 + } + ], + "parent_id": "f7843db6-26da-44f9-ae05-6bb92ca573f6", + "name": "Merlin_42_mRNA-00001", + "location": { + "strand": -1, + "id": 541, + "fmin": 5010, + "fmax": 6066 + }, + "id": 540, + "properties": [], + "date_last_modified": 1593424039879 + } +}