Mercurial > repos > gga > apollo_create_or_update
comparison create_or_update_organism.xml @ 1:b194ffbd6ae1 draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit f55bad7dcf56bd9625874cd89f3894aee35d91ef
| author | gga |
|---|---|
| date | Tue, 19 Sep 2017 12:22:46 -0400 |
| parents | cd595b5d890a |
| children | aee984715db1 |
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| 0:cd595b5d890a | 1:b194ffbd6ae1 |
|---|---|
| 5 <import>macros.xml</import> | 5 <import>macros.xml</import> |
| 6 </macros> | 6 </macros> |
| 7 <expand macro="requirements"/> | 7 <expand macro="requirements"/> |
| 8 <code file="webapollo.py"/> | 8 <code file="webapollo.py"/> |
| 9 <command detect_errors="aggressive"><![CDATA[ | 9 <command detect_errors="aggressive"><![CDATA[ |
| 10 cp -R '${jbrowse.extra_files_path}/data/' '@DATA_DIR@/${jbrowse.id}' | 10 cp -R '${jbrowse.extra_files_path}/data/' "@DATA_DIR@/${jbrowse.id}" |
| 11 | 11 |
| 12 && | 12 && |
| 13 | 13 |
| 14 python $__tool_directory__/create_or_update_organism.py | 14 python $__tool_directory__/create_or_update_organism.py |
| 15 | 15 |
| 23 ${remove_old_directory} | 23 ${remove_old_directory} |
| 24 $public | 24 $public |
| 25 | 25 |
| 26 @ORG_OR_GUESS@ | 26 @ORG_OR_GUESS@ |
| 27 | 27 |
| 28 '@DATA_DIR@/${jbrowse.id}' | 28 "@DATA_DIR@/${jbrowse.id}" |
| 29 | 29 |
| 30 $__user_email__ | 30 $__user_email__ |
| 31 | 31 |
| 32 > $output]]></command> | 32 > $output]]></command> |
| 33 <inputs> | 33 <inputs> |