Mercurial > repos > gga > apollo_delete_features

comparison test-data/load_gff3/output.txt @ 13:21a8cad7dfa5 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 7bf18c69becc57152efdadedf7ebd0bcfa382a15"
author gga
date Mon, 29 Jun 2020 09:12:19 -0400
parents
children
comparison
equal deleted inserted replaced
12:90c7d1d29b15 13:21a8cad7dfa5
1 {
2 "Merlin_1_mRNA": {
3 "owner": "admin@local.host",
4 "parent_name": "Merlin_1_mRNA",
5 "uniquename": "d33cb6e8-0809-442f-84ff-015aff163846",
6 "type": {
7 "cv": {
8 "name": "sequence"
9 },
10 "name": "mRNA"
11 },
12 "parent_type": {
13 "cv": {
14 "name": "sequence"
15 },
16 "name": "gene"
17 },
18 "date_creation": 1593424039041,
19 "sequence": "Merlin",
20 "children": [
21 {
22 "owner": "None",
23 "parent_name": "Merlin_1_mRNA-00001",
24 "uniquename": "d33cb6e8-0809-442f-84ff-015aff163846-CDS",
25 "type": {
26 "cv": {
27 "name": "sequence"
28 },
29 "name": "CDS"
30 },
31 "parent_type": {
32 "cv": {
33 "name": "sequence"
34 },
35 "name": "mRNA"
36 },
37 "date_creation": 1593424039071,
38 "sequence": "Merlin",
39 "parent_id": "d33cb6e8-0809-442f-84ff-015aff163846",
40 "name": "d33cb6e8-0809-442f-84ff-015aff163846-CDS",
41 "location": {
42 "strand": 1,
43 "is_fmin_partial": true,
44 "id": 459,
45 "fmin": 1,
46 "fmax": 691
47 },
48 "id": 458,
49 "properties": [],
50 "date_last_modified": 1593424039095
51 },
52 {
53 "owner": "None",
54 "parent_name": "Merlin_1_mRNA-00001",
55 "uniquename": "0356ce47-8746-4557-9f45-2b08625ebc63",
56 "type": {
57 "cv": {
58 "name": "sequence"
59 },
60 "name": "exon"
61 },
62 "parent_type": {
63 "cv": {
64 "name": "sequence"
65 },
66 "name": "mRNA"
67 },
68 "date_creation": 1593424039029,
69 "sequence": "Merlin",
70 "parent_id": "d33cb6e8-0809-442f-84ff-015aff163846",
71 "name": "0356ce47-8746-4557-9f45-2b08625ebc63",
72 "location": {
73 "strand": 1,
74 "id": 455,
75 "fmin": 1,
76 "fmax": 691
77 },
78 "id": 454,
79 "properties": [],
80 "date_last_modified": 1593424039078
81 }
82 ],
83 "parent_id": "436dee83-9e76-44c3-94a8-37ac15c57e8e",
84 "name": "Merlin_1_mRNA-00001",
85 "location": {
86 "strand": 1,
87 "id": 453,
88 "fmin": 1,
89 "fmax": 691
90 },
91 "id": 452,
92 "properties": [],
93 "date_last_modified": 1593424039249
94 },
95 "Merlin_2_mRNA": {
96 "owner": "admin@local.host",
97 "parent_name": "mrna-name",
98 "uniquename": "d5d0e6eb-458d-4402-b2ee-c19e4c1e0666",
99 "type": {
100 "cv": {
101 "name": "sequence"
102 },
103 "name": "mRNA"
104 },
105 "parent_type": {
106 "cv": {
107 "name": "sequence"
108 },
109 "name": "gene"
110 },
111 "date_creation": 1593424039315,
112 "sequence": "Merlin",
113 "children": [
114 {
115 "owner": "None",
116 "parent_name": "mrna-name-00001",
117 "uniquename": "d5d0e6eb-458d-4402-b2ee-c19e4c1e0666-CDS",
118 "type": {
119 "cv": {
120 "name": "sequence"
121 },
122 "name": "CDS"
123 },
124 "parent_type": {
125 "cv": {
126 "name": "sequence"
127 },
128 "name": "mRNA"
129 },
130 "date_creation": 1593424039321,
131 "sequence": "Merlin",
132 "parent_id": "d5d0e6eb-458d-4402-b2ee-c19e4c1e0666",
133 "name": "d5d0e6eb-458d-4402-b2ee-c19e4c1e0666-CDS",
134 "location": {
135 "strand": 1,
136 "id": 471,
137 "fmin": 751,
138 "fmax": 1039
139 },
140 "id": 470,
141 "properties": [],
142 "date_last_modified": 1593424039334
143 },
144 {
145 "owner": "None",
146 "parent_name": "mrna-name-00001",
147 "uniquename": "46e2b6ce-5cf2-4472-b858-9535a374f535",
148 "type": {
149 "cv": {
150 "name": "sequence"
151 },
152 "name": "exon"
153 },
154 "parent_type": {
155 "cv": {
156 "name": "sequence"
157 },
158 "name": "mRNA"
159 },
160 "date_creation": 1593424039312,
161 "sequence": "Merlin",
162 "parent_id": "d5d0e6eb-458d-4402-b2ee-c19e4c1e0666",
163 "name": "46e2b6ce-5cf2-4472-b858-9535a374f535",
164 "location": {
165 "strand": 1,
166 "id": 467,
167 "fmin": 751,
168 "fmax": 1039
169 },
170 "id": 466,
171 "properties": [],
172 "date_last_modified": 1593424039328
173 }
174 ],
175 "parent_id": "9d2661e7-c095-426e-a9ce-0e0f9d68c1ca",
176 "name": "mrna-name-00001",
177 "location": {
178 "strand": 1,
179 "id": 465,
180 "fmin": 751,
181 "fmax": 1039
182 },
183 "id": 464,
184 "properties": [],
185 "date_last_modified": 1593424039356
186 },
187 "Merlin_3_mRNA": {
188 "owner": "admin@local.host",
189 "parent_name": "Merlin_3_mRNA",
190 "uniquename": "c1e84840-7b7e-4c45-b044-e6ffaa89cb5d",
191 "type": {
192 "cv": {
193 "name": "sequence"
194 },
195 "name": "mRNA"
196 },
197 "parent_type": {
198 "cv": {
199 "name": "sequence"
200 },
201 "name": "gene"
202 },
203 "date_creation": 1593424039392,
204 "sequence": "Merlin",
205 "children": [
206 {
207 "owner": "None",
208 "parent_name": "Merlin_3_mRNA-00001",
209 "uniquename": "3fc60774-85c1-4cbd-aca3-1a1a74a2cbf3",
210 "type": {
211 "cv": {
212 "name": "sequence"
213 },
214 "name": "exon"
215 },
216 "parent_type": {
217 "cv": {
218 "name": "sequence"
219 },
220 "name": "mRNA"
221 },
222 "date_creation": 1593424039390,
223 "sequence": "Merlin",
224 "parent_id": "c1e84840-7b7e-4c45-b044-e6ffaa89cb5d",
225 "name": "3fc60774-85c1-4cbd-aca3-1a1a74a2cbf3",
226 "location": {
227 "strand": -1,
228 "id": 479,
229 "fmin": 1066,
230 "fmax": 2011
231 },
232 "id": 478,
233 "properties": [],
234 "date_last_modified": 1593424039410
235 },
236 {
237 "owner": "None",
238 "parent_name": "Merlin_3_mRNA-00001",
239 "uniquename": "c1e84840-7b7e-4c45-b044-e6ffaa89cb5d-CDS",
240 "type": {
241 "cv": {
242 "name": "sequence"
243 },
244 "name": "CDS"
245 },
246 "parent_type": {
247 "cv": {
248 "name": "sequence"
249 },
250 "name": "mRNA"
251 },
252 "date_creation": 1593424039403,
253 "sequence": "Merlin",
254 "parent_id": "c1e84840-7b7e-4c45-b044-e6ffaa89cb5d",
255 "name": "c1e84840-7b7e-4c45-b044-e6ffaa89cb5d-CDS",
256 "location": {
257 "strand": -1,
258 "id": 483,
259 "fmin": 1066,
260 "fmax": 2011
261 },
262 "id": 482,
263 "properties": [],
264 "date_last_modified": 1593424039416
265 }
266 ],
267 "parent_id": "6a3cfa63-9957-44c2-855e-8914d14c6773",
268 "name": "Merlin_3_mRNA-00001",
269 "location": {
270 "strand": -1,
271 "id": 477,
272 "fmin": 1066,
273 "fmax": 2011
274 },
275 "id": 476,
276 "properties": [],
277 "date_last_modified": 1593424039439
278 },
279 "Merlin_4_mRNA": {
280 "owner": "admin@local.host",
281 "parent_name": "Merlin_4_mRNA",
282 "uniquename": "4b3f4451-6feb-4a89-85ee-002c03679c4b",
283 "type": {
284 "cv": {
285 "name": "sequence"
286 },
287 "name": "mRNA"
288 },
289 "parent_type": {
290 "cv": {
291 "name": "sequence"
292 },
293 "name": "gene"
294 },
295 "date_creation": 1593424039555,
296 "sequence": "Merlin",
297 "children": [
298 {
299 "owner": "None",
300 "parent_name": "Merlin_4_mRNA-00001",
301 "uniquename": "4b3f4451-6feb-4a89-85ee-002c03679c4b-CDS",
302 "type": {
303 "cv": {
304 "name": "sequence"
305 },
306 "name": "CDS"
307 },
308 "parent_type": {
309 "cv": {
310 "name": "sequence"
311 },
312 "name": "mRNA"
313 },
314 "date_creation": 1593424039563,
315 "sequence": "Merlin",
316 "parent_id": "4b3f4451-6feb-4a89-85ee-002c03679c4b",
317 "name": "4b3f4451-6feb-4a89-85ee-002c03679c4b-CDS",
318 "location": {
319 "strand": -1,
320 "id": 503,
321 "fmin": 2010,
322 "fmax": 3066
323 },
324 "id": 502,
325 "properties": [],
326 "date_last_modified": 1593424039575
327 },
328 {
329 "owner": "None",
330 "parent_name": "Merlin_4_mRNA-00001",
331 "uniquename": "4322d1af-5aa0-4777-9bd2-20d87b807d1e",
332 "type": {
333 "cv": {
334 "name": "sequence"
335 },
336 "name": "exon"
337 },
338 "parent_type": {
339 "cv": {
340 "name": "sequence"
341 },
342 "name": "mRNA"
343 },
344 "date_creation": 1593424039553,
345 "sequence": "Merlin",
346 "parent_id": "4b3f4451-6feb-4a89-85ee-002c03679c4b",
347 "name": "4322d1af-5aa0-4777-9bd2-20d87b807d1e",
348 "location": {
349 "strand": -1,
350 "id": 499,
351 "fmin": 2010,
352 "fmax": 3066
353 },
354 "id": 498,
355 "properties": [],
356 "date_last_modified": 1593424039569
357 }
358 ],
359 "parent_id": "71eafcd2-8ef6-4a71-88c2-bcac2f342e28",
360 "name": "Merlin_4_mRNA-00001",
361 "location": {
362 "strand": -1,
363 "id": 497,
364 "fmin": 2010,
365 "fmax": 3066
366 },
367 "id": 496,
368 "properties": [],
369 "date_last_modified": 1593424039596
370 },
371 "Merlin_5_mRNA": {
372 "owner": "admin@local.host",
373 "parent_name": "Merlin_5_mRNA",
374 "uniquename": "19b80336-a138-4276-96e1-116a7787afe8",
375 "type": {
376 "cv": {
377 "name": "sequence"
378 },
379 "name": "mRNA"
380 },
381 "parent_type": {
382 "cv": {
383 "name": "sequence"
384 },
385 "name": "gene"
386 },
387 "date_creation": 1593424039700,
388 "sequence": "Merlin",
389 "children": [
390 {
391 "owner": "None",
392 "parent_name": "Merlin_5_mRNA-00001",
393 "uniquename": "19b80336-a138-4276-96e1-116a7787afe8-non_canonical_five_prime_splice_site-4363",
394 "type": {
395 "cv": {
396 "name": "sequence"
397 },
398 "name": "non_canonical_five_prime_splice_site"
399 },
400 "parent_type": {
401 "cv": {
402 "name": "sequence"
403 },
404 "name": "mRNA"
405 },
406 "date_creation": 1593424039756,
407 "sequence": "Merlin",
408 "parent_id": "19b80336-a138-4276-96e1-116a7787afe8",
409 "name": "19b80336-a138-4276-96e1-116a7787afe8-non_canonical_five_prime_splice_site-4363",
410 "location": {
411 "strand": -1,
412 "id": 532,
413 "fmin": 4363,
414 "fmax": 4363
415 },
416 "id": 531,
417 "properties": [],
418 "date_last_modified": 1593424039803
419 },
420 {
421 "owner": "None",
422 "parent_name": "Merlin_5_mRNA-00001",
423 "uniquename": "19b80336-a138-4276-96e1-116a7787afe8-non_canonical_three_prime_splice_site-4296",
424 "type": {
425 "cv": {
426 "name": "sequence"
427 },
428 "name": "non_canonical_three_prime_splice_site"
429 },
430 "parent_type": {
431 "cv": {
432 "name": "sequence"
433 },
434 "name": "mRNA"
435 },
436 "date_creation": 1593424039767,
437 "sequence": "Merlin",
438 "parent_id": "19b80336-a138-4276-96e1-116a7787afe8",
439 "name": "19b80336-a138-4276-96e1-116a7787afe8-non_canonical_three_prime_splice_site-4296",
440 "location": {
441 "strand": -1,
442 "id": 535,
443 "fmin": 4296,
444 "fmax": 4296
445 },
446 "id": 534,
447 "properties": [],
448 "date_last_modified": 1593424039804
449 },
450 {
451 "owner": "None",
452 "parent_name": "Merlin_5_mRNA-00001",
453 "uniquename": "f192c0c8-c043-474a-9cba-fe593340a28f",
454 "type": {
455 "cv": {
456 "name": "sequence"
457 },
458 "name": "exon"
459 },
460 "parent_type": {
461 "cv": {
462 "name": "sequence"
463 },
464 "name": "mRNA"
465 },
466 "date_creation": 1593424039691,
467 "sequence": "Merlin",
468 "parent_id": "19b80336-a138-4276-96e1-116a7787afe8",
469 "name": "f192c0c8-c043-474a-9cba-fe593340a28f",
470 "location": {
471 "strand": -1,
472 "id": 522,
473 "fmin": 3065,
474 "fmax": 4296
475 },
476 "id": 521,
477 "properties": [],
478 "date_last_modified": 1593424039696
479 },
480 {
481 "owner": "None",
482 "parent_name": "Merlin_5_mRNA-00001",
483 "uniquename": "31a23617-42b1-4bf1-a65d-45eccdd17e8e",
484 "type": {
485 "cv": {
486 "name": "sequence"
487 },
488 "name": "exon"
489 },
490 "parent_type": {
491 "cv": {
492 "name": "sequence"
493 },
494 "name": "mRNA"
495 },
496 "date_creation": 1593424039699,
497 "sequence": "Merlin",
498 "parent_id": "19b80336-a138-4276-96e1-116a7787afe8",
499 "name": "31a23617-42b1-4bf1-a65d-45eccdd17e8e",
500 "location": {
501 "strand": -1,
502 "id": 525,
503 "fmin": 4365,
504 "fmax": 4796
505 },
506 "id": 524,
507 "properties": [],
508 "date_last_modified": 1593424039716
509 },
510 {
511 "owner": "None",
512 "parent_name": "Merlin_5_mRNA-00001",
513 "uniquename": "19b80336-a138-4276-96e1-116a7787afe8-CDS",
514 "type": {
515 "cv": {
516 "name": "sequence"
517 },
518 "name": "CDS"
519 },
520 "parent_type": {
521 "cv": {
522 "name": "sequence"
523 },
524 "name": "mRNA"
525 },
526 "date_creation": 1593424039710,
527 "sequence": "Merlin",
528 "parent_id": "19b80336-a138-4276-96e1-116a7787afe8",
529 "name": "19b80336-a138-4276-96e1-116a7787afe8-CDS",
530 "location": {
531 "strand": -1,
532 "id": 529,
533 "fmin": 3065,
534 "fmax": 4796
535 },
536 "id": 528,
537 "properties": [],
538 "date_last_modified": 1593424039722
539 }
540 ],
541 "parent_id": "f380f7b1-2b7d-45cd-8d0b-2519b1b0afee",
542 "name": "Merlin_5_mRNA-00001",
543 "location": {
544 "strand": -1,
545 "id": 520,
546 "fmin": 3065,
547 "fmax": 4796
548 },
549 "id": 519,
550 "properties": [],
551 "date_last_modified": 1593424039810
552 },
553 "Merlin_42_mRNA": {
554 "owner": "admin@local.host",
555 "parent_name": "Merlin_42_mRNA",
556 "uniquename": "0e34cfa5-6f64-4111-9c2f-37655f6f1b92",
557 "type": {
558 "cv": {
559 "name": "sequence"
560 },
561 "name": "mRNA"
562 },
563 "parent_type": {
564 "cv": {
565 "name": "sequence"
566 },
567 "name": "gene"
568 },
569 "date_creation": 1593424039850,
570 "sequence": "Merlin",
571 "children": [
572 {
573 "owner": "None",
574 "parent_name": "Merlin_42_mRNA-00001",
575 "uniquename": "6596e6e2-a894-4c0b-98c1-298c65f0c021",
576 "type": {
577 "cv": {
578 "name": "sequence"
579 },
580 "name": "exon"
581 },
582 "parent_type": {
583 "cv": {
584 "name": "sequence"
585 },
586 "name": "mRNA"
587 },
588 "date_creation": 1593424039841,
589 "sequence": "Merlin",
590 "parent_id": "0e34cfa5-6f64-4111-9c2f-37655f6f1b92",
591 "name": "6596e6e2-a894-4c0b-98c1-298c65f0c021",
592 "location": {
593 "strand": -1,
594 "id": 543,
595 "fmin": 5010,
596 "fmax": 6066
597 },
598 "id": 542,
599 "properties": [],
600 "date_last_modified": 1593424039847
601 },
602 {
603 "owner": "None",
604 "parent_name": "Merlin_42_mRNA-00001",
605 "uniquename": "a42c4166-5211-49b9-9110-e5fd41c9d2cb",
606 "type": {
607 "cv": {
608 "name": "sequence"
609 },
610 "name": "CDS"
611 },
612 "parent_type": {
613 "cv": {
614 "name": "sequence"
615 },
616 "name": "mRNA"
617 },
618 "date_creation": 1593424039849,
619 "sequence": "Merlin",
620 "parent_id": "0e34cfa5-6f64-4111-9c2f-37655f6f1b92",
621 "name": "a42c4166-5211-49b9-9110-e5fd41c9d2cb",
622 "location": {
623 "strand": -1,
624 "id": 546,
625 "fmin": 5288,
626 "fmax": 6065,
627 "is_fmax_partial": true
628 },
629 "id": 545,
630 "properties": [],
631 "date_last_modified": 1593424039867
632 }
633 ],
634 "parent_id": "f7843db6-26da-44f9-ae05-6bb92ca573f6",
635 "name": "Merlin_42_mRNA-00001",
636 "location": {
637 "strand": -1,
638 "id": 541,
639 "fmin": 5010,
640 "fmax": 6066
641 },
642 "id": 540,
643 "properties": [],
644 "date_last_modified": 1593424039879
645 }
646 }