comparison test-data/dataset_1_files/galaxy.xml @ 10:df0e4eb2dfa5 draft

"planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 08015be1ee8a784e0619f961aaa724857debfd6f"

10:df0e4eb2dfa5

<?xml version="1.0"?>
<root>
    <metadata>
        <gencode>1</gencode>
        <genomes>
              <genome path="/opt/galaxy-dist/database/files/002/188/dataset_2188862.dat">
                <metadata>
                  <dataset id="7495a4247e72f5f1" hid="1"
                      size="171.6 KB"
                      edam_format="format_1929"
                      file_ext="fasta" />
                  <history id="d29e465b351a50c9"
                      user_email="[e-mail]"
                      user_id="17"
                      display_name="Unnamed history"/>
                  <metadata
                      dbkey="?"
                      data_lines="2881"
                      sequences="1"
                      />
                  <tool
                      tool_id="upload1"
                      tool_version="1.1.6"
                      />
                </metadata>
              </genome>
        </genomes>
        <general>
            <defaultLocation></defaultLocation>
            <trackPadding>20</trackPadding>

            <shareLink>true</shareLink>
            <aboutDescription></aboutDescription>
            <show_tracklist>true</show_tracklist>
            <show_nav>true</show_nav>
            <show_overview>true</show_overview>
            <show_menu>true</show_menu>
            <hideGenomeOptions>false</hideGenomeOptions>
        </general>
        <galaxyUrl>http://localhost</galaxyUrl>
    </metadata>
    <tracks>
        <track cat="Default" format="gene_calls" visibility="default_off">
            <files>
              <trackFile path="/opt/galaxy-dist/database/files/002/188/dataset_2188863.dat" ext="gff3" label="merlin.gff">
                <metadata>
                  <dataset id="b02ee2031011d9cf" hid="2"
                      size="110.3 KB"
                      edam_format="format_1975"
                      file_ext="gff3" />
                  <history id="d29e465b351a50c9"
                      user_email="[e-mail]"
                      user_id="17"
                      display_name="Unnamed history"/>
                  <metadata
                      dbkey="?"
                      data_lines="1228"
                      comment_lines="2"
                      columns="9"
                      delimiter="__tc__"
                      attributes="4"
                      />
                  <tool
                      tool_id="upload1"
                      tool_version="1.1.6"
                      />
                </metadata>
              </trackFile>
            </files>

            <options>
                <style>
                    <overridePlugins>False</overridePlugins>
                    <overrideDraggable>False</overrideDraggable>
                    <className>feature</className>
                    <description>note,description</description>
                    <label>product,name,id</label>
                    <height>10px</height>
                    <maxHeight>600</maxHeight>
                </style>
                <scaling>
                        <method>ignore</method>
                        <scheme>
                            <color>__auto__</color>
                        </scheme>
                </scaling>
                <menus>
                </menus>
                <custom_config>
                </custom_config>

                <gff>
                    <trackType>NeatHTMLFeatures/View/Track/NeatFeatures</trackType>
                    <index>false</index>
                </gff>
            </options>
        </track>
    </tracks>
    <plugins
        ComboTrackSelector=""
        Bookmarks=""
        GCContent=""
        BlastView="True"
        theme=""
        />
</root>