Mercurial > repos > gga > apollo_export
diff test-data/dataset_1_files/data/trackList.json @ 10:c3b5bc8b4080 draft
"planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 08015be1ee8a784e0619f961aaa724857debfd6f"
author | gga |
---|---|
date | Mon, 02 Dec 2019 05:43:20 -0500 |
parents | |
children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/dataset_1_files/data/trackList.json Mon Dec 02 05:43:20 2019 -0500 @@ -0,0 +1,170 @@ +{ + "formatVersion" : 1, + "hideGenomeOptions" : false, + "names" : { + "type" : "Hash", + "url" : "names/" + }, + "plugins" : [ + { + "location" : "https://cdn.jsdelivr.net/gh/TAMU-CPT/blastview@97572a21b7f011c2b4d9a0b5af40e292d694cbef/", + "name" : "BlastView" + } + ], + "refSeqs" : "seq/genome.fasta.fai", + "shareLink" : true, + "show_menu" : true, + "show_nav" : true, + "show_overview" : true, + "show_tracklist" : true, + "tracks" : [ + { + "category" : "Reference sequence", + "codonStarts" : [ + "TTG", + "CTG", + "ATG" + ], + "codonStops" : [ + "TAA", + "TAG", + "TGA" + ], + "codonTable" : { + "AAA" : "K", + "AAC" : "N", + "AAG" : "K", + "AAT" : "N", + "ACA" : "T", + "ACC" : "T", + "ACG" : "T", + "ACT" : "T", + "AGA" : "R", + "AGC" : "S", + "AGG" : "R", + "AGT" : "S", + "ATA" : "I", + "ATC" : "I", + "ATG" : "M", + "ATT" : "I", + "CAA" : "Q", + "CAC" : "H", + "CAG" : "Q", + "CAT" : "H", + "CCA" : "P", + "CCC" : "P", + "CCG" : "P", + "CCT" : "P", + "CGA" : "R", + "CGC" : "R", + "CGG" : "R", + "CGT" : "R", + "CTA" : "L", + "CTC" : "L", + "CTG" : "L", + "CTT" : "L", + "GAA" : "E", + "GAC" : "D", + "GAG" : "E", + "GAT" : "D", + "GCA" : "A", + "GCC" : "A", + "GCG" : "A", + "GCT" : "A", + "GGA" : "G", + "GGC" : "G", + "GGG" : "G", + "GGT" : "G", + "GTA" : "V", + "GTC" : "V", + "GTG" : "V", + "GTT" : "V", + "TAC" : "Y", + "TAT" : "Y", + "TCA" : "S", + "TCC" : "S", + "TCG" : "S", + "TCT" : "S", + "TGC" : "C", + "TGG" : "W", + "TGT" : "C", + "TTA" : "L", + "TTC" : "F", + "TTG" : "L", + "TTT" : "F" + }, + "faiUrlTemplate" : "seq/genome.fasta.fai", + "key" : "Reference sequence", + "label" : "DNA", + "metadata" : { + "dataset_edam_format" : "<a target=\"_blank\" href=\"http://edamontology.org/format_1929\">fasta</a>", + "dataset_file_ext" : "fasta", + "dataset_hid" : "1", + "dataset_id" : "7495a4247e72f5f1", + "dataset_size" : "171.6 KB", + "history_display_name" : "<a target=\"_blank\" href=\"http://localhost/history/view/d29e465b351a50c9\">Unnamed history</a>", + "history_id" : "d29e465b351a50c9", + "history_user_email" : "<a href=\"mailto:anthony.bretaudeau@irisa.fr\">anthony.bretaudeau@irisa.fr</a>", + "history_user_id" : "17", + "metadata_data_lines" : "2881", + "metadata_dbkey" : "?", + "metadata_sequences" : "1", + "tool_tool" : "<a target=\"_blank\" href=\"http://localhost/datasets/7495a4247e72f5f1/show_params\">upload1</a>", + "tool_tool_id" : "upload1", + "tool_tool_version" : "1.1.6" + }, + "seqType" : "dna", + "storeClass" : "JBrowse/Store/SeqFeature/IndexedFasta", + "type" : "SequenceTrack", + "urlTemplate" : "seq/genome.fasta", + "useAsRefSeqStore" : 1 + }, + { + "category" : "Default", + "key" : "merlin.gff", + "label" : "4ced49b280a72a29f1b922ae1a9664c8_0", + "maxHeight" : "600", + "menuTemplate" : [ + {}, + {}, + {}, + {} + ], + "metadata" : { + "dataset_edam_format" : "<a target=\"_blank\" href=\"http://edamontology.org/format_1975\">gff3</a>", + "dataset_file_ext" : "gff3", + "dataset_hid" : "2", + "dataset_id" : "b02ee2031011d9cf", + "dataset_size" : "110.3 KB", + "history_display_name" : "<a target=\"_blank\" href=\"http://localhost/history/view/d29e465b351a50c9\">Unnamed history</a>", + "history_id" : "d29e465b351a50c9", + "history_user_email" : "<a href=\"mailto:anthony.bretaudeau@irisa.fr\">anthony.bretaudeau@irisa.fr</a>", + "history_user_id" : "17", + "metadata_attributes" : "4", + "metadata_columns" : "9", + "metadata_comment_lines" : "2", + "metadata_data_lines" : "1228", + "metadata_dbkey" : "?", + "metadata_delimiter" : "__tc__", + "tool_tool" : "<a target=\"_blank\" href=\"http://localhost/datasets/b02ee2031011d9cf/show_params\">upload1</a>", + "tool_tool_id" : "upload1", + "tool_tool_version" : "1.1.6" + }, + "overrideDraggable" : false, + "overridePlugins" : false, + "storeClass" : "JBrowse/Store/SeqFeature/GFF3Tabix", + "style" : { + "className" : "feature", + "color" : "#a6cee3", + "description" : "note,description", + "label" : "product,name,id" + }, + "trackType" : "NeatHTMLFeatures/View/Track/NeatFeatures", + "type" : "NeatHTMLFeatures/View/Track/NeatFeatures", + "urlTemplate" : "raw/4ced49b280a72a29f1b922ae1a9664c8_0.gff.gz" + } + ], + "view" : { + "trackPadding" : 20 + } +}