# HG changeset patch
# User gga
# Date 1554918949 14400
# Node ID ad02f02c75e38fe157cb5d394462a43dd72ae276
# Parent  db216690cbbfa8034239d1da0b847baffba9e9c5
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 2488ac4ea447c45886ce5c7b102fb28c5839d26b

diff -r db216690cbbf -r ad02f02c75e3 create_or_update_organism.py
--- a/create_or_update_organism.py	Fri Mar 15 06:03:48 2019 -0400
+++ b/create_or_update_organism.py	Wed Apr 10 13:55:49 2019 -0400
@@ -47,7 +47,7 @@
     if(os.path.exists(args.jbrowse)):
         shutil.rmtree(args.jbrowse)
     # Copy files
-    shutil.copytree(args.jbrowse_src, args.jbrowse)
+    shutil.copytree(args.jbrowse_src, args.jbrowse, symlinks=True)
 
     path_fasta = args.jbrowse + '/seq/genome.fasta'
     path_2bit = args.jbrowse + '/seq/genome.2bit'