comparison json2iframe.py @ 0:5aa3bc8d0253 draft

planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit f745b23c84a615bf434d717c8c0e553a012f0268
author gga
date Mon, 11 Sep 2017 05:45:37 -0400
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children 09dacc7c6a21
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-1:000000000000 0:5aa3bc8d0253
1 #!/usr/bin/env python
2 from __future__ import print_function
3
4 import argparse
5 import json
6
7
8 if __name__ == '__main__':
9 parser = argparse.ArgumentParser(description='Sample script to add an attribute to a feature via web services')
10 parser.add_argument('apollo', help='Complete Apollo URL')
11 parser.add_argument('json', type=argparse.FileType("r"), help='JSON Data')
12 parser.add_argument('external_apollo_url')
13
14 args = parser.parse_args()
15
16 # https://fqdn/apollo/annotator/loadLink?loc=NC_005880:0..148317&organism=326&tracks=
17 data = json.load(args.json)
18
19 # This is base64 encoded to get past the toolshed's filters.
20 HTML_TPL = """
21 <html>
22 <head>
23 <title>Embedded Apollo Access</title>
24 <style type="text/css">body {{margin: 0;}} iframe {{border: 0;width: 100%;height: 100%}}</style>
25 </head>
26 <body>
27 <iframe src="{base_url}/annotator/loadLink?loc={chrom}&organism={orgId}&tracklist=1"></iframe>
28 </body>
29 </html>
30 """
31
32 print(HTML_TPL.format(base_url=args.external_apollo_url, chrom="", orgId=data[0]['id']))