Mercurial > repos > gga > apollo_feat_from_gff3
comparison json2iframe.py @ 0:5aa3bc8d0253 draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit f745b23c84a615bf434d717c8c0e553a012f0268
| author | gga |
|---|---|
| date | Mon, 11 Sep 2017 05:45:37 -0400 |
| parents | |
| children | 09dacc7c6a21 |
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| -1:000000000000 | 0:5aa3bc8d0253 |
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| 1 #!/usr/bin/env python | |
| 2 from __future__ import print_function | |
| 3 | |
| 4 import argparse | |
| 5 import json | |
| 6 | |
| 7 | |
| 8 if __name__ == '__main__': | |
| 9 parser = argparse.ArgumentParser(description='Sample script to add an attribute to a feature via web services') | |
| 10 parser.add_argument('apollo', help='Complete Apollo URL') | |
| 11 parser.add_argument('json', type=argparse.FileType("r"), help='JSON Data') | |
| 12 parser.add_argument('external_apollo_url') | |
| 13 | |
| 14 args = parser.parse_args() | |
| 15 | |
| 16 # https://fqdn/apollo/annotator/loadLink?loc=NC_005880:0..148317&organism=326&tracks= | |
| 17 data = json.load(args.json) | |
| 18 | |
| 19 # This is base64 encoded to get past the toolshed's filters. | |
| 20 HTML_TPL = """ | |
| 21 <html> | |
| 22 <head> | |
| 23 <title>Embedded Apollo Access</title> | |
| 24 <style type="text/css">body {{margin: 0;}} iframe {{border: 0;width: 100%;height: 100%}}</style> | |
| 25 </head> | |
| 26 <body> | |
| 27 <iframe src="{base_url}/annotator/loadLink?loc={chrom}&organism={orgId}&tracklist=1"></iframe> | |
| 28 </body> | |
| 29 </html> | |
| 30 """ | |
| 31 | |
| 32 print(HTML_TPL.format(base_url=args.external_apollo_url, chrom="", orgId=data[0]['id'])) |