Mercurial > repos > gga > apollo_feat_from_gff3
comparison webapollo.py @ 4:7c4a3e737e08 draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 70fbb41d4c6b0a08a7bed4849a5ae7c865e1ab1e
author | gga |
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date | Mon, 12 Mar 2018 06:31:11 -0400 |
parents | 9779fb963d69 |
children | cc098732daf6 |
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3:0ab9b5af30e7 | 4:7c4a3e737e08 |
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4 import collections | 4 import collections |
5 import json | 5 import json |
6 import logging | 6 import logging |
7 import os | 7 import os |
8 import time | 8 import time |
9 | |
10 from abc import abstractmethod | 9 from abc import abstractmethod |
11 from builtins import next | |
12 from builtins import object | |
13 from builtins import str | |
14 | 10 |
15 from BCBio import GFF | 11 from BCBio import GFF |
16 | 12 |
17 from Bio import SeqIO | 13 from Bio import SeqIO |
18 | 14 |
19 from future import standard_library | |
20 | |
21 import requests | 15 import requests |
22 | 16 |
23 | 17 from six.moves.builtins import next |
24 standard_library.install_aliases() | 18 from six.moves.builtins import object |
19 from six.moves.builtins import str | |
20 | |
21 | |
25 try: | 22 try: |
26 import StringIO as io | 23 import StringIO as io |
27 except BaseException: | 24 except BaseException: |
28 import io | 25 import io |
29 logging.getLogger("requests").setLevel(logging.CRITICAL) | 26 logging.getLogger("requests").setLevel(logging.CRITICAL) |