Mercurial > repos > gga > apollo_feat_from_gff3
comparison create_or_update_organism.py @ 8:922dd0b252c8 draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 2488ac4ea447c45886ce5c7b102fb28c5839d26b
| author | gga |
|---|---|
| date | Wed, 10 Apr 2019 13:53:48 -0400 |
| parents | 59904413f3db |
| children | 5d1cf95ade8a |
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| 7:59904413f3db | 8:922dd0b252c8 |
|---|---|
| 45 | 45 |
| 46 # Cleanup if existing | 46 # Cleanup if existing |
| 47 if(os.path.exists(args.jbrowse)): | 47 if(os.path.exists(args.jbrowse)): |
| 48 shutil.rmtree(args.jbrowse) | 48 shutil.rmtree(args.jbrowse) |
| 49 # Copy files | 49 # Copy files |
| 50 shutil.copytree(args.jbrowse_src, args.jbrowse) | 50 shutil.copytree(args.jbrowse_src, args.jbrowse, symlinks=True) |
| 51 | 51 |
| 52 path_fasta = args.jbrowse + '/seq/genome.fasta' | 52 path_fasta = args.jbrowse + '/seq/genome.fasta' |
| 53 path_2bit = args.jbrowse + '/seq/genome.2bit' | 53 path_2bit = args.jbrowse + '/seq/genome.2bit' |
| 54 | 54 |
| 55 # Convert fasta if existing | 55 # Convert fasta if existing |