Mercurial > repos > gga > apollo_feat_from_gff3
diff README.rst @ 0:5aa3bc8d0253 draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit f745b23c84a615bf434d717c8c0e553a012f0268
| author | gga |
|---|---|
| date | Mon, 11 Sep 2017 05:45:37 -0400 |
| parents | |
| children | 46c766c7baa7 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README.rst Mon Sep 11 05:45:37 2017 -0400 @@ -0,0 +1,39 @@ +Galaxy-apollo +============= + +Galaxy tools to interface with Apollo The webapollo.py file is also +`separately +available <https://github.com/galaxy-genome-annotation/python-apollo>`__ +as a pip-installable package. + +Environ + +The following environment variables must be set: + ++--------------------------------+-----------------------------------------------------------+ +| ENV | Use | ++================================+===========================================================+ +| ``$GALAXY_WEBAPOLLO_URL`` | The URL at which Apollo is accessible, internal to Galaxy | +| | and where the tools run. Must be absolute, with FQDN and | +| | protocol. | ++--------------------------------+-----------------------------------------------------------+ +| ``$GALAXY_WEBAPOLLO_USER`` | The admin user which Galaxy should use to talk to Apollo. | +| | | ++--------------------------------+-----------------------------------------------------------+ +| ``$GALAXY_WEBAPOLLO_PASSWORD`` | The password for the admin user. | +| | | +| | | ++--------------------------------+-----------------------------------------------------------+ +| ``$GALAXY_WEBAPOLLO_EXT_URL`` | users. May be relative or absolute. | +| | The external URL at which Apollo is accessible to end | +| | | ++--------------------------------+-----------------------------------------------------------+ +| ``$GALAXY_SHARED_DIR`` | Directory shared between Galaxy and Apollo, used to | +| | exchange JBrowse instances. | ++--------------------------------+-----------------------------------------------------------+ + +License +------- + +All python scripts, wrappers, and the webapollo.py are licensed under +MIT license.