# HG changeset patch
# User gga
# Date 1554918828 14400
# Node ID 922dd0b252c879cf302e2367d7992f977e1d2011
# Parent  59904413f3db002774538303ed7a5e7e011359b5
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 2488ac4ea447c45886ce5c7b102fb28c5839d26b

diff -r 59904413f3db -r 922dd0b252c8 create_or_update_organism.py
--- a/create_or_update_organism.py	Fri Mar 15 06:03:31 2019 -0400
+++ b/create_or_update_organism.py	Wed Apr 10 13:53:48 2019 -0400
@@ -47,7 +47,7 @@
     if(os.path.exists(args.jbrowse)):
         shutil.rmtree(args.jbrowse)
     # Copy files
-    shutil.copytree(args.jbrowse_src, args.jbrowse)
+    shutil.copytree(args.jbrowse_src, args.jbrowse, symlinks=True)
 
     path_fasta = args.jbrowse + '/seq/genome.fasta'
     path_2bit = args.jbrowse + '/seq/genome.2bit'