Mercurial > repos > gga > apollo_fetch_jbrowse
diff fetch_organism_jbrowse.xml @ 5:1a2976c6b161 draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 85194fa009ead2c34720faab61a4143fc29d17c2
author | gga |
---|---|
date | Fri, 31 Aug 2018 09:33:16 -0400 |
parents | 9968eec7430e |
children | d8bb1f9b85b2 |
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--- a/fetch_organism_jbrowse.xml Mon Mar 12 06:30:56 2018 -0400 +++ b/fetch_organism_jbrowse.xml Fri Aug 31 09:33:16 2018 -0400 @@ -15,7 +15,9 @@ @ADMIN_AUTH@ @ORG_OR_GUESS@ -$jbrowse.files_path/ && +$jbrowse.files_path/ + +"$__user_email__" && cp $dummyIndex $jbrowse && find $jbrowse.files_path -type f -printf '<li><a href="%P">%P</a></li>\n' | sort >> $jbrowse && @@ -56,7 +58,9 @@ <expand macro="org_or_guess" /> </inputs> <outputs> - <data format="html" name="jbrowse"/> + <data format="html" name="jbrowse"> + <discover_datasets pattern="(?P<designation>.+)\.txt" format="tabular" visible="true"/> + </data> </outputs> <tests> <test expect_failure="true">