Mercurial > repos > gga > apollo_fetch_jbrowse

diff fetch_organism_jbrowse.xml @ 5:1a2976c6b161 draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 85194fa009ead2c34720faab61a4143fc29d17c2
author gga
date Fri, 31 Aug 2018 09:33:16 -0400
parents 9968eec7430e
children d8bb1f9b85b2
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line diff
--- a/fetch_organism_jbrowse.xml	Mon Mar 12 06:30:56 2018 -0400
+++ b/fetch_organism_jbrowse.xml	Fri Aug 31 09:33:16 2018 -0400
@@ -15,7 +15,9 @@
 @ADMIN_AUTH@
 
 @ORG_OR_GUESS@
-$jbrowse.files_path/ &&
+$jbrowse.files_path/ 
+
+"$__user_email__" &&
 
 cp $dummyIndex $jbrowse &&
 find $jbrowse.files_path -type f -printf '<li><a href="%P">%P</a></li>\n' | sort >> $jbrowse &&
@@ -56,7 +58,9 @@
     <expand macro="org_or_guess" />
   </inputs>
   <outputs>
-    <data format="html" name="jbrowse"/>
+    <data format="html" name="jbrowse">
+        <discover_datasets pattern="(?P&lt;designation&gt;.+)\.txt" format="tabular" visible="true"/>
+    </data>
   </outputs>
   <tests>
       <test expect_failure="true">