diff export.py @ 13:6905bb3ce9db draft

"planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 7bf18c69becc57152efdadedf7ebd0bcfa382a15"

--- a/export.py	Fri Apr 24 09:03:01 2020 -0400
+++ b/export.py	Mon Jun 29 09:13:41 2020 -0400
@@ -52,28 +52,28 @@
 
         uuid_gff = wa.io.write_downloadable(org['commonName'], 'GFF3', export_gff3_fasta=True, sequences=seqs)
         if 'error' in uuid_gff or 'uuid' not in uuid_gff:
-            raise Exception("Apollo failed to prepare the file for download: %s" % uuid_gff)
+            raise Exception("Apollo failed to prepare the GFF3 file for download: %s" % uuid_gff)
         args.gff.write(wa.io.download(uuid_gff['uuid'], output_format="text"))
 
         time.sleep(1)
 
         uuid_vcf = wa.io.write_downloadable(org['commonName'], 'VCF', sequences=seqs)
         if 'error' in uuid_vcf or 'uuid' not in uuid_vcf:
-            raise Exception("Apollo failed to prepare the file for download: %s" % uuid_vcf)
+            raise Exception("Apollo failed to prepare the VCF file for download: %s" % uuid_vcf)
         args.vcf.write(wa.io.download(uuid_vcf['uuid'], output_format="text"))
 
         time.sleep(1)
 
         uuid_fa = wa.io.write_downloadable(org['commonName'], 'FASTA', sequences=seqs, seq_type='cdna')
         if 'error' in uuid_fa or 'uuid' not in uuid_fa:
-            raise Exception("Apollo failed to prepare the file for download: %s" % uuid_fa)
+            raise Exception("Apollo failed to prepare the cdna FASTA file for download: %s" % uuid_fa)
         args.fasta_cdna.write(wa.io.download(uuid_fa['uuid'], output_format="text"))
 
         time.sleep(1)
 
         uuid_fa = wa.io.write_downloadable(org['commonName'], 'FASTA', sequences=seqs, seq_type='cds')
         if 'error' in uuid_fa or 'uuid' not in uuid_fa:
-            raise Exception("Apollo failed to prepare the file for download: %s" % uuid_fa)
+            raise Exception("Apollo failed to prepare the cds FASTA file for download: %s" % uuid_fa)
         args.fasta_cds.write(wa.io.download(uuid_fa['uuid'], output_format="text"))
 
         time.sleep(1)