Mercurial > repos > gga > apollo_fetch_jbrowse
diff json2iframe.py @ 0:c6d7f19953a6 draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit f745b23c84a615bf434d717c8c0e553a012f0268
| author | gga |
|---|---|
| date | Mon, 11 Sep 2017 05:47:25 -0400 |
| parents | |
| children | d8bb1f9b85b2 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/json2iframe.py Mon Sep 11 05:47:25 2017 -0400 @@ -0,0 +1,32 @@ +#!/usr/bin/env python +from __future__ import print_function + +import argparse +import json + + +if __name__ == '__main__': + parser = argparse.ArgumentParser(description='Sample script to add an attribute to a feature via web services') + parser.add_argument('apollo', help='Complete Apollo URL') + parser.add_argument('json', type=argparse.FileType("r"), help='JSON Data') + parser.add_argument('external_apollo_url') + + args = parser.parse_args() + + # https://fqdn/apollo/annotator/loadLink?loc=NC_005880:0..148317&organism=326&tracks= + data = json.load(args.json) + + # This is base64 encoded to get past the toolshed's filters. + HTML_TPL = """ + <html> + <head> + <title>Embedded Apollo Access</title> + <style type="text/css">body {{margin: 0;}} iframe {{border: 0;width: 100%;height: 100%}}</style> + </head> + <body> + <iframe src="{base_url}/annotator/loadLink?loc={chrom}&organism={orgId}&tracklist=1"></iframe> + </body> + </html> + """ + + print(HTML_TPL.format(base_url=args.external_apollo_url, chrom="", orgId=data[0]['id']))