Mercurial > repos > gga > apollo_list_organism
comparison create_or_update_organism.py @ 17:8dc690130172 draft default tip
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 12282c16658b37858f49944796fd95515ef0fc0b
| author | gga |
|---|---|
| date | Wed, 11 Jan 2023 11:48:41 +0000 |
| parents | f515aa0b0437 |
| children |
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| 16:78abc724d792 | 17:8dc690130172 |
|---|---|
| 86 | 86 |
| 87 path_fasta = args.jbrowse_src + '/seq/genome.fasta' | 87 path_fasta = args.jbrowse_src + '/seq/genome.fasta' |
| 88 | 88 |
| 89 # Cleanup if existing | 89 # Cleanup if existing |
| 90 if not IsRemote(): | 90 if not IsRemote(): |
| 91 if(os.path.exists(args.jbrowse)): | 91 if os.path.exists(args.jbrowse): |
| 92 shutil.rmtree(args.jbrowse) | 92 shutil.rmtree(args.jbrowse) |
| 93 # Copy files | 93 # Copy files |
| 94 shutil.copytree(args.jbrowse_src, args.jbrowse, symlinks=True) | 94 shutil.copytree(args.jbrowse_src, args.jbrowse, symlinks=True) |
| 95 | 95 |
| 96 path_2bit = args.jbrowse + '/seq/genome.2bit' | 96 path_2bit = args.jbrowse + '/seq/genome.2bit' |