Mercurial > repos > gga > apollo_list_organism

diff list_organisms.xml @ 0:1f2e360f7554 draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit f745b23c84a615bf434d717c8c0e553a012f0268
author gga
date Mon, 11 Sep 2017 05:48:05 -0400
parents
children b69804a685e2
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/list_organisms.xml	Mon Sep 11 05:48:05 2017 -0400
@@ -0,0 +1,31 @@
+<?xml version="1.0"?>
+<tool id="list_organism" name="List Organisms" version="3.0">
+  <description>in Apollo</description>
+  <macros>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="requirements"/>
+  <command detect_errors="aggressive"><![CDATA[
+python $__tool_directory__/list_organisms.py
+@ADMIN_AUTH@
+$__user_email__
+> $output]]></command>
+  <inputs>
+  </inputs>
+  <outputs>
+    <data format="json" name="output"/>
+  </outputs>
+  <tests>
+      <test expect_failure="true">
+          <expand macro="test_result" />
+      </test>
+  </tests>
+  <help><![CDATA[
+**What it does**
+
+Lists organism in Apollo
+
+@REFERENCES@
+      ]]></help>
+  <expand macro="citations"/>
+</tool>