diff test-data/dataset_1_files/galaxy.xml @ 10:bc2b80fc7e30 draft

"planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 08015be1ee8a784e0619f961aaa724857debfd6f"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/dataset_1_files/galaxy.xml	Mon Dec 02 05:49:03 2019 -0500
@@ -0,0 +1,106 @@
+<?xml version="1.0"?>
+<root>
+    <metadata>
+        <gencode>1</gencode>
+        <genomes>
+              <genome path="/opt/galaxy-dist/database/files/002/188/dataset_2188862.dat">
+                <metadata>
+                  <dataset id="7495a4247e72f5f1" hid="1"
+                      size="171.6 KB"
+                      edam_format="format_1929"
+                      file_ext="fasta" />
+                  <history id="d29e465b351a50c9"
+                      user_email="[e-mail]"
+                      user_id="17"
+                      display_name="Unnamed history"/>
+                  <metadata
+                      dbkey="?"
+                      data_lines="2881"
+                      sequences="1"
+                      />
+                  <tool
+                      tool_id="upload1"
+                      tool_version="1.1.6"
+                      />
+                </metadata>
+              </genome>
+        </genomes>
+        <general>
+            <defaultLocation></defaultLocation>
+            <trackPadding>20</trackPadding>
+
+            <shareLink>true</shareLink>
+            <aboutDescription></aboutDescription>
+            <show_tracklist>true</show_tracklist>
+            <show_nav>true</show_nav>
+            <show_overview>true</show_overview>
+            <show_menu>true</show_menu>
+            <hideGenomeOptions>false</hideGenomeOptions>
+        </general>
+        <galaxyUrl>http://localhost</galaxyUrl>
+    </metadata>
+    <tracks>
+        <track cat="Default" format="gene_calls" visibility="default_off">
+            <files>
+              <trackFile path="/opt/galaxy-dist/database/files/002/188/dataset_2188863.dat" ext="gff3" label="merlin.gff">
+                <metadata>
+                  <dataset id="b02ee2031011d9cf" hid="2"
+                      size="110.3 KB"
+                      edam_format="format_1975"
+                      file_ext="gff3" />
+                  <history id="d29e465b351a50c9"
+                      user_email="[e-mail]"
+                      user_id="17"
+                      display_name="Unnamed history"/>
+                  <metadata
+                      dbkey="?"
+                      data_lines="1228"
+                      comment_lines="2"
+                      columns="9"
+                      delimiter="__tc__"
+                      attributes="4"
+                      />
+                  <tool
+                      tool_id="upload1"
+                      tool_version="1.1.6"
+                      />
+                </metadata>
+              </trackFile>
+            </files>
+
+            <options>
+                <style>
+                    <overridePlugins>False</overridePlugins>
+                    <overrideDraggable>False</overrideDraggable>
+                    <className>feature</className>
+                    <description>note,description</description>
+                    <label>product,name,id</label>
+                    <height>10px</height>
+                    <maxHeight>600</maxHeight>
+                </style>
+                <scaling>
+                        <method>ignore</method>
+                        <scheme>
+                            <color>__auto__</color>
+                        </scheme>
+                </scaling>
+                <menus>
+                </menus>
+                <custom_config>
+                </custom_config>
+
+                <gff>
+                    <trackType>NeatHTMLFeatures/View/Track/NeatFeatures</trackType>
+                    <index>false</index>
+                </gff>
+            </options>
+        </track>
+    </tracks>
+    <plugins
+        ComboTrackSelector=""
+        Bookmarks=""
+        GCContent=""
+        BlastView="True"
+        theme=""
+        />
+</root>