Mercurial > repos > gga > apollo_list_organism
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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit f745b23c84a615bf434d717c8c0e553a012f0268
| author | gga |
|---|---|
| date | Mon, 11 Sep 2017 05:48:05 -0400 |
| parents | |
| children | cf83ae09b88b |
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Galaxy-apollo ============= Galaxy tools to interface with Apollo The webapollo.py file is also `separately available <https://github.com/galaxy-genome-annotation/python-apollo>`__ as a pip-installable package. Environ The following environment variables must be set: +--------------------------------+-----------------------------------------------------------+ | ENV | Use | +================================+===========================================================+ | ``$GALAXY_WEBAPOLLO_URL`` | The URL at which Apollo is accessible, internal to Galaxy | | | and where the tools run. Must be absolute, with FQDN and | | | protocol. | +--------------------------------+-----------------------------------------------------------+ | ``$GALAXY_WEBAPOLLO_USER`` | The admin user which Galaxy should use to talk to Apollo. | | | | +--------------------------------+-----------------------------------------------------------+ | ``$GALAXY_WEBAPOLLO_PASSWORD`` | The password for the admin user. | | | | | | | +--------------------------------+-----------------------------------------------------------+ | ``$GALAXY_WEBAPOLLO_EXT_URL`` | users. May be relative or absolute. | | | The external URL at which Apollo is accessible to end | | | | +--------------------------------+-----------------------------------------------------------+ | ``$GALAXY_SHARED_DIR`` | Directory shared between Galaxy and Apollo, used to | | | exchange JBrowse instances. | +--------------------------------+-----------------------------------------------------------+ License ------- All python scripts, wrappers, and the webapollo.py are licensed under MIT license.