Mercurial > repos > gga > apollo_list_organism

view list_organisms.xml @ 7:8bcf0fb07f1e draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit b9143221aee2cd09e1334ee56ff9651550b1797a
author gga
date Fri, 15 Mar 2019 06:05:35 -0400
parents a3000d01c04c
children f26ac3b582e1
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<?xml version="1.0"?>
<tool id="list_organism" name="List Organisms" version="3.1">
  <description>in Apollo</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements"/>
  <command detect_errors="aggressive"><![CDATA[
python $__tool_directory__/list_organisms.py
@ADMIN_AUTH@
$__user_email__
> $output]]></command>
  <inputs>
  </inputs>
  <outputs>
    <data format="json" name="output">
        <discover_datasets pattern="(?P&lt;designation&gt;.+)\.txt" format="tabular" visible="true"/>
    </data>
  </outputs>
  <tests>
      <test expect_failure="true">
          <expand macro="test_result" />
      </test>
  </tests>
  <help><![CDATA[
**What it does**

Lists organism in Apollo

@REFERENCES@
      ]]></help>
  <expand macro="citations"/>
</tool>