Mercurial > repos > gga > apollo_list_organism
view list_organisms.xml @ 10:bc2b80fc7e30 draft
"planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 08015be1ee8a784e0619f961aaa724857debfd6f"
author | gga |
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date | Mon, 02 Dec 2019 05:49:03 -0500 |
parents | f26ac3b582e1 |
children | 06254eb0cb13 |
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<?xml version="1.0"?> <tool id="list_organism" name="List Organisms" version="@WRAPPER_VERSION@"> <description>in Apollo</description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements"/> <command detect_errors="aggressive"><![CDATA[ @AUTH@ python '$__tool_directory__/list_organisms.py' '$__user_email__' > '$output']]></command> <inputs> </inputs> <outputs> <data format="json" name="output"> <discover_datasets pattern="(?P<designation>.+)\.txt" format="tabular" visible="true"/> </data> </outputs> <tests> <test> <output name="output"> <assert_contents> <has_text text="alt_org" /> <has_text text="test_organism" /> <has_text text="apollo_shared_dir/org1" /> <has_text text="apollo_shared_dir/org2" /> <has_text text="Testus" /> </assert_contents> </output> </test> </tests> <help><![CDATA[ **What it does** Lists organism in Apollo @REFERENCES@ ]]></help> <expand macro="citations"/> </tool>