view @ 1:cf83ae09b88b draft

planemo upload for repository commit f55bad7dcf56bd9625874cd89f3894aee35d91ef
author gga
date Tue, 19 Sep 2017 12:23:58 -0400
parents 1f2e360f7554
children f26ac3b582e1
line wrap: on
line source

#!/usr/bin/env python
from __future__ import print_function

import argparse
import json

if __name__ == '__main__':
    parser = argparse.ArgumentParser(description='Sample script to add an attribute to a feature via web services')
    parser.add_argument('apollo', help='Complete Apollo URL')
    parser.add_argument('json', type=argparse.FileType("r"), help='JSON Data')

    args = parser.parse_args()

    # https://fqdn/apollo/annotator/loadLink?loc=NC_005880:0..148317&organism=326&tracks=
    data = json.load(args.json)

    # This is base64 encoded to get past the toolshed's filters.
    HTML_TPL = """
                <title>Embedded Apollo Access</title>
                <style type="text/css">body {{margin: 0;}} iframe {{border: 0;width: 100%;height: 100%}}</style>
                <iframe src="{base_url}/annotator/loadLink?loc={chrom}&organism={orgId}&tracklist=1"></iframe>

    print(HTML_TPL.format(base_url=args.external_apollo_url, chrom="", orgId=data[0]['id']))