4.2.5
apollo
\$GALAXY_SHARED_DIR
"\$GALAXY_WEBAPOLLO_EXT_URL"
"\$GALAXY_WEBAPOLLO_URL"
'.auth.yml' &&
echo "local:" >> '.auth.yml' &&
echo " url: \"\$GALAXY_WEBAPOLLO_URL\"" >> '.auth.yml' &&
echo " username: \"\$GALAXY_WEBAPOLLO_USER\"" >> '.auth.yml' &&
echo " password: \"\$GALAXY_WEBAPOLLO_PASSWORD\"" >> '.auth.yml' &&
export ARROW_GLOBAL_CONFIG_PATH='.auth.yml'
; fi &&
]]>
0:
--seq_raw
#for $item in $cn_source.refseqs:
'${item.refseq}'
#end for
#end if
#end if
]]>
10.1371/journal.pcbi.1006790
#if $reference_genome.reference_genome_source == 'history':
ln -s '$reference_genome.genome_fasta' genomeref.fa;
#end if
#if $reference_genome.reference_genome_source == 'cached':
'${reference_genome.fasta_indexes.fields.path}'
#elif $reference_genome.reference_genome_source == 'history':
genomeref.fa
#end if
`_
]]>