# HG changeset patch
# User gga
# Date 1554919665 14400
# Node ID 2c749ed310daecb8432c4d82275836a62c37333d
# Parent  8bcf0fb07f1ed2217814ae707e0298bf7492d93e
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 2488ac4ea447c45886ce5c7b102fb28c5839d26b

diff -r 8bcf0fb07f1e -r 2c749ed310da create_or_update_organism.py
--- a/create_or_update_organism.py	Fri Mar 15 06:05:35 2019 -0400
+++ b/create_or_update_organism.py	Wed Apr 10 14:07:45 2019 -0400
@@ -47,7 +47,7 @@
     if(os.path.exists(args.jbrowse)):
         shutil.rmtree(args.jbrowse)
     # Copy files
-    shutil.copytree(args.jbrowse_src, args.jbrowse)
+    shutil.copytree(args.jbrowse_src, args.jbrowse, symlinks=True)
 
     path_fasta = args.jbrowse + '/seq/genome.fasta'
     path_2bit = args.jbrowse + '/seq/genome.2bit'