annotate analysis_add_analysis.xml @ 2:9779f10c1e31 draft

planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit a2ffd6de889096d5326410800d7f972e16347bc4

<?xml version="1.0"?>
<tool id="analysis_add_analysis" name="Chado analysis add" version="@WRAPPER_VERSION@.0">
 <description></description>
	<macros>
		<import>macros.xml</import>
	</macros>
	<expand macro="requirements"/>
	<command detect_errors="aggressive"><![CDATA[
@AUTH@

chakin analysis add_analysis
'$name'
'$program'
'$programversion'
'$sourcename'

#if $algorithm:
  --algorithm '$algorithm'
#end if
#if $sourceversion:
  --sourceversion '$sourceversion'
#end if
#if $sourceuri:
  --sourceuri '$sourceuri'
#end if
#if $description:
  --description '$description'
#end if
#if $date_executed:
  --date_executed '$date_executed'
#end if

| jq -S . > $results
    ]]></command>
	<inputs>
    <!-- arguments -->
	<param name="name" label="Name" argument="name" type="text" help="analysis name" />
	<param name="program" label="Program" argument="program" type="text" help="analysis program" />
	<param name="programversion" label="Programversion" argument="programversion" type="text" help="analysis programversion" />
	<param name="sourcename" label="Sourcename" argument="sourcename" type="text" help="analysis sourcename" />

    <!-- options -->
	<param name="algorithm" label="Algorithm" argument="algorithm" type="text" help="analysis algorithm" optional="True" />
	<param name="sourceversion" label="Sourceversion" argument="sourceversion" type="text" help="analysis sourceversion" optional="True" />
	<param name="sourceuri" label="Sourceuri" argument="sourceuri" type="text" help="analysis sourceuri" optional="True" />
	<param name="description" label="Description" argument="description" type="text" help="analysis description" optional="True" />
	<param name="date_executed" label="Date Executed" argument="date_executed" type="text" optional="True" help="analysis date_executed (yyyy-mm-dd)">
		<validator type="regex" message="Date in YYYY-MM-DD format">^[0-9]{4}-[0-9]{2}-[0-9]{2}$</validator>
	</param>

	</inputs>
	<outputs>
		<data format="json" name="results"/>
	</outputs>
	<help>
Create an analysis

@HELP@
	</help>
</tool>