annotate analysis_get_analyses.xml @ 6:8a87a22cf4ba draft

planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit c5b949de324bf86c88c680767e56ac77685cd14c

<?xml version="1.0"?>
<tool id="analysis_get_analyses" name="Chado analysis get" version="@WRAPPER_VERSION@.0">
 <description></description>
	<macros>
		<import>macros.xml</import>
	</macros>
	<expand macro="requirements"/>
	<command detect_errors="aggressive"><![CDATA[
@AUTH@

chakin analysis get_analyses

#if $analysis_id:
  --analysis_id '$analysis_id'
#end if
#if $name:
  --name '$name'
#end if
#if $program:
  --program '$program'
#end if
#if $programversion:
  --programversion '$programversion'
#end if
#if $algorithm:
  --algorithm '$algorithm'
#end if
#if $sourcename:
  --sourcename '$sourcename'
#end if
#if $sourceversion:
  --sourceversion '$sourceversion'
#end if
#if $sourceuri:
  --sourceuri '$sourceuri'
#end if
#if $description:
  --description '$description'
#end if

| jq -S . > $results
    ]]></command>
	<inputs>
    <!-- arguments -->

    <!-- options -->
	<param name="analysis_id" label="Analysis Id" argument="analysis_id" type="integer" help="analysis_id filter" optional="True" />
	<param name="name" label="Name" argument="name" type="text" help="analysis name filter" optional="True" />
	<param name="program" label="Program" argument="program" type="text" help="analysis program filter" optional="True" />
	<param name="programversion" label="Programversion" argument="programversion" type="text" help="analysis programversion filter" optional="True" />
	<param name="algorithm" label="Algorithm" argument="algorithm" type="text" help="analysis algorithm filter" optional="True" />
	<param name="sourcename" label="Sourcename" argument="sourcename" type="text" help="analysis sourcename filter" optional="True" />
	<param name="sourceversion" label="Sourceversion" argument="sourceversion" type="text" help="analysis sourceversion filter" optional="True" />
	<param name="sourceuri" label="Sourceuri" argument="sourceuri" type="text" help="analysis sourceuri filter" optional="True" />
	<param name="description" label="Description" argument="description" type="text" help="analysis description" optional="True" />

	</inputs>
	<outputs>
		<data format="json" name="results"/>
	</outputs>
	<help>
Get all or some analyses

@HELP@
	</help>
</tool>