annotate analysis_get_analyses.xml @ 19:dd51b60848f0 draft

"planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit fa25d58f87bfe8b12dc9a497c08855ee5d8ff641"

<?xml version="1.0"?>
<tool id="analysis_get_analyses" name="Chado analysis get" version="@WRAPPER_VERSION@">
    <description></description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements"/>
    <command detect_errors="aggressive"><![CDATA[
@START_PSQL@ &&

chakin analysis get_analyses

#if $analysis_id:
  --analysis_id '$analysis_id'
#end if
#if $name:
  --name '$name'
#end if
#if $program:
  --program '$program'
#end if
#if $programversion:
  --programversion '$programversion'
#end if
#if $algorithm:
  --algorithm '$algorithm'
#end if
#if $sourcename:
  --sourcename '$sourcename'
#end if
#if $sourceversion:
  --sourceversion '$sourceversion'
#end if
#if $sourceuri:
  --sourceuri '$sourceuri'
#end if
#if $description:
  --description '$description'
#end if

| jq -S . > '$results'

@STOP_PSQL@
    ]]></command>
    <inputs>
      <expand macro="psql_target"/>
      <!-- options -->
      <param name="analysis_id" label="Analysis Id" argument="--analysis_id" type="integer" help="analysis_id filter" optional="True" />
      <param name="name" label="Name" argument="--name" type="text" help="analysis name filter" optional="True" />
      <param name="program" label="Program" argument="--program" type="text" help="analysis program filter" optional="True" />
      <param name="programversion" label="Programversion" argument="--programversion" type="text" help="analysis programversion filter" optional="True" />
      <param name="algorithm" label="Algorithm" argument="--algorithm" type="text" help="analysis algorithm filter" optional="True" />
      <param name="sourcename" label="Sourcename" argument="--sourcename" type="text" help="analysis sourcename filter" optional="True" />
      <param name="sourceversion" label="Sourceversion" argument="--sourceversion" type="text" help="analysis sourceversion filter" optional="True" />
      <param name="sourceuri" label="Sourceuri" argument="--sourceuri" type="text" help="analysis sourceuri filter" optional="True" />
      <param name="description" label="Description" argument="--description" type="text" help="analysis description" optional="True" />

    </inputs>
    <outputs>
        <data format="json" name="results"/>
    </outputs>
    <help>
Get all or some analyses

@HELP@
    </help>
</tool>