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view export_export_gff3.xml @ 11:eb33ee64bf99 draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit bc69ce09372c8c2701b726c326e671af279adb4d
author gga
date Thu, 11 Jul 2019 08:36:18 -0400
parents b739fe763fcc
children 95b713e2a861
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<?xml version="1.0"?>
<tool id="export_export_gff3" name="Chado export gff3" version="@WRAPPER_VERSION@.1">
    <description></description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements"/>
    <code file="chado.py"/>
    <command detect_errors="aggressive"><![CDATA[
@START_PSQL@ &&

chakin export export_gff3
'$organism'

 > '$results'

 @STOP_PSQL@
    ]]></command>
    <inputs>
        <expand macro="psql_target"/>
        <!-- arguments -->
        <param argument="--organism"
               type="select"
               dynamic_options="list_organisms()"
               label="Organism" />

        <!-- options -->
        <expand macro="wait_for"/>

    </inputs>
    <outputs>
        <data format="gff3" name="results"/>
    </outputs>
    <help>
Export organism features as GFF3

@HELP@
    </help>
</tool>